miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 91.7 bits (46), Expect = 1e-18
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggatcccgccttgcacc 77
Query: 61 aagtga 66
||||||
Sbjct: 78 aagtga 83
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgac-gggccggatcccgccttgcac 59
||||||||||||||||||||||| ||||| | | | | |||||||||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 78
Query: 60 caagtga 66
|||||||
Sbjct: 79 caagtga 85
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 61.9 bits (31), Expect = 9e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgccc-gccccgacgggccggatcccgccttgcac 59
|||||||||||||||||||||| ||||| || | |||||| | |||||||||||||||
Sbjct: 19 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 78
Query: 60 caagtga 66
|||||||
Sbjct: 79 caagtga 85
