miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 cggcggttctgattgagccgtgccaatatc 78
||||| ||||||||||||||||||||||||
Sbjct: 63 cggcgtttctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 cggcggttctgattgagccgtgccaatatc 78
||||| ||||||||||||||||||||||||
Sbjct: 63 cggcgtttctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 50 ggcggttctgattgagccgtgccaatatc 78
|||| ||||||||||||||||||||||||
Sbjct: 71 ggcgtttctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatatc 125
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagaccac 27
|||||||||||| ||||||||||||||
Sbjct: 11 gatgttggctcggctcactcagaccac 37
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 101 ttctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 86 ttctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 86 ttctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 54 tctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 64 tctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 65 tctgattgagccgtgccaatatc 87
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatc 100
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 ggttctgattgagccgtgccaatatc 78
|||| |||||||||||||||||||||
Sbjct: 77 ggttttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 111 tgattgagccgtgccaatatc 131
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatc 80
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 106 tgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 85 tgattgagccgtgccaatatc 105
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatc 122
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 86 tgattgagccgtgccaatatc 106
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 66 tgattgagccgtgccaatatc 86
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatc 122
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 103 tgattgagccgtgccaatatc 123
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
