miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01942;mir-1937;AAHY01028167.1/11464-11345 10090:Mus musculus
          (house mouse)
          Length = 120

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                               
Query: 57 ccaggacagccagggctacagagagaaaccctgtctc 93
          |||||||||||||||||| | ||||||||||||||||
Sbjct: 44 ccaggacagccagggctataaagagaaaccctgtctc 8




>RF01942;mir-1937;AAHY01043322.1/11565-11447 10090:Mus musculus
          (house mouse)
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 35 agcctggtctacaaagtgagtgccaggacagccagg 70
          ||||||||||||| ||| ||| ||||||||||||||
Sbjct: 9  agcctggtctacagagtaagttccaggacagccagg 44




>RF00100;7SK;CAAA01104750.1/952-684 10090:Mus musculus (house mouse)
          Length = 269

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 66  ccagggctacagagagaaaccctgtctc 93
           ||||||||||| ||||||||||||||||
Sbjct: 269 ccagggctacacagagaaaccctgtctc 242