miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHY01062164.1/19497-19401 10090:Mus musculus
          (house mouse)
          Length = 97

 Score =  113 bits (57), Expect = 3e-25
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggggcttg 61
          ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 21 agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggggcttg 80

                   
Query: 62 aatgcaagc 70
          | |||||||
Sbjct: 81 actgcaagc 89




>RF00825;mir-344;CAAA01110658.1/31741-31836 10090:Mus musculus
          (house mouse)
          Length = 96

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                 
Query: 2  agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggg 56
          ||||||| ||||||| ||||||| ||||||| |||| ||||||||||||||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctcagctgggtccaggctctagccaggg 75




>RF00825;mir-344;AABR04015933.1/11010-10914 10116:Rattus
          norvegicus (Norway rat)
          Length = 97

 Score = 61.9 bits (31), Expect = 9e-10
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                 
Query: 2  agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggg 56
          ||||||| ||||||| ||||||| ||||| | |||| ||||||||||||||||||
Sbjct: 22 agtcaggctcctggctggagtccagctctaagctggatccaggctctagccaggg 76




>RF00825;mir-344;AABR04006115.1/24439-24344 10116:Rattus
          norvegicus (Norway rat)
          Length = 96

 Score = 61.9 bits (31), Expect = 9e-10
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                 
Query: 2  agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggg 56
          ||||||| ||||||| ||||||| ||||| | |||| ||||||||||||||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctaagctggatccaggctctagccaggg 75




>RF00825;mir-344;AC117644.6/172227-172322 10090:Mus musculus
          (house mouse)
          Length = 96

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                        
Query: 10 tcctggcaggagtcctgctctcaactggttccaggctctagccagg 55
          ||||||| ||||||| ||||| | ||||||||||||||||||||||
Sbjct: 29 tcctggctggagtccagctctaagctggttccaggctctagccagg 74




>RF00825;mir-344;CAAA01010483.1/3830-3925 10090:Mus musculus
          (house mouse)
          Length = 96

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                            
Query: 2  agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagc 51
          ||||||| | ||||| ||||||| |||||||||||| ||||| |||||||
Sbjct: 21 agtcaggcttctggctggagtccagctctcaactggatccagtctctagc 70




>RF00825;mir-344;AC091333.6/101672-101766 10090:Mus musculus
          (house mouse)
          Length = 95

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 27 ctctcaactggttccaggctctagcca 53
          |||||| ||||||||||||||||||||
Sbjct: 45 ctctcacctggttccaggctctagcca 71