miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score =  139 bits (70), Expect = 8e-33
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                      
Query: 9  cactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacgaacaac 68
          |||||||||||||||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaac 60

                                         
Query: 69 acgaaccgatcgataaacctctgcatccagt 99
          |||||||||||||||||||||||||||||||
Sbjct: 61 acgaaccgatcgataaacctctgcatccagt 91




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
          trichocarpa
          Length = 91

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                      
Query: 9  cactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacgaacaac 68
          |||||||||||||||||||||||||| ||||||   |       ||||  |||||| |||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaac 60

                                        
Query: 69 acgaaccgatcgataaacctctgcatccag 98
          | ||||||||||||||||||||||||||||
Sbjct: 61 atgaaccgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
          (papaya)
          Length = 91

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatcttttcctg 41
          |||||||||||||||||||||||||| ||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 66 aacacgaaccgatcgataaacctctgcatccag 98
          |||| ||| ||||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
          (castor bean)
          Length = 96

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatcttttcctg 41
          |||||||||||||||||||||||||| ||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 75 cgatcgataaacctctgcatccag 98
          ||||||||||||||||||||||||
Sbjct: 72 cgatcgataaacctctgcatccag 95




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 11 ctggaggcagcggttcatcgatcttttcctg 41
          |||||||||||||||||||||||| ||||||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctg 33



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 76 gatcgataaacctctgcatccag 98
          |||||||||||||||||||||||
Sbjct: 65 gatcgataaacctctgcatccag 87




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
          (barrel medic)
          Length = 90

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 9  cactggaggcagcggttcatcgatcttttcctgaa 43
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 1  cactggatgcagcggttcatcgatctgttcctgaa 35




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 9  cactggaggcagcggttcatcgatcttttcctgaa 43
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 1  cactggatgcagcggttcatcgatctcttcctgaa 35




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 75  cgatcgataaacctctgcatccagt 99
           |||||||||||||||||||||||||
Sbjct: 134 cgatcgataaacctctgcatccagt 158




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 75  cgatcgataaacctctgcatccagt 99
           |||||||||||||||||||||||||
Sbjct: 135 cgatcgataaacctctgcatccagt 159




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
          (thale cress)
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 75 cgatcgataaacctctgcatccag 98
          ||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 ctggaggcagcggttcatcgatc 33
          |||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatc 25




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 75  cgatcgataaacctctgcatccag 98
           ||||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatccag 131