miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
          Length = 148

 Score =  293 bits (148), Expect = 4e-79
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   gatggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttc 60

                                                                       
Query: 69  ttgctggagttacgagttacgactcttacctactattgattttgttagctccagtgagtt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgctggagttacgagttacgactcttacctactattgattttgttagctccagtgagtt 120

                                       
Query: 129 agttattcatgtgcctgtcttcctcatc 156
           ||||||||||||||||||||||||||||
Sbjct: 121 agttattcatgtgcctgtcttcctcatc 148




>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
           trichocarpa
          Length = 157

 Score =  167 bits (84), Expect = 6e-41
 Identities = 142/162 (87%), Gaps = 7/162 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 1   gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60

                                                                       
Query: 61  cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
             ||||||||||||       |||||| |||||||||||||||| |||| |||| ||| |
Sbjct: 61  gacatttcttgctg-------gagttatgactcttacctactatagattgtgttggcttc 113

                                                     
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
           || ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 114 agcgagttagttcttcatgtgcctgtcttccccatcatgatc 155




>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
          Length = 146

 Score = 87.7 bits (44), Expect = 4e-17
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                          
Query: 3  gagcaagatggagaagcagggcacgtgcactactaactcatgcacaca 50
          ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3  gagcaagatggagaagcagggcacgtgcattactaactcatgcacaca 50




>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
          Length = 115

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                        
Query: 2  tgagcaagatggagaagcagggcacgtgcactactaactcatgcac 47
          |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47




>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
          (castor bean)
          Length = 124

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                        
Query: 1  gtgagcaagatggagaagcagggcacgtgcactactaactcatgca 46
          ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  gtgagcaagatggagaagcagggcacgtgcattactaactcatgca 46




>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
          Length = 160

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 2  tgagcaagatggagaagcagggcacgtgcactactaactcatgcac 47
          |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47




>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
          (barrel medic)
          Length = 153

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 6  caagatggagaagcagggcacgtgcactactaactcatg 44
          |||||||||||||||||||||||||| ||||||||||||
Sbjct: 6  caagatggagaagcagggcacgtgcaatactaactcatg 44




>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
          Length = 290

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                     
Query: 2  tgagcaagatggagaagcagggcacgtgcactactaactcatg 44
          ||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcaacactaactcatg 44




>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
          cress)
          Length = 171

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 2  tgagcaagatggagaagcagggcacgtgcactactaactcat 43
          |||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcat 43




>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
          cress)
          Length = 170

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 2  tgagcaagatggagaagcagggcacgtgcactactaactcat 43
          |||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcat 43




>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
          (thale cress)
          Length = 169

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 2  tgagcaagatggagaagcagggcacgtgcactactaactcat 43
          |||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcat 43




>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
          Length = 295

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                       
Query: 6  caagatggagaagcagggcacgtgcactactaactcatgcacaca 50
          |||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 6  caagatggagaagcagggcacgtgcaatgctaactcatgaacaca 50



 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 114 tagctccagtgagttagttattcatgtgcctgtcttcctcatcatga 160
           ||||||||||||||||||  ||||||||||  |||||| ||||||||
Sbjct: 245 tagctccagtgagttagtgcttcatgtgcccctcttccccatcatga 291




>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
          Length = 159

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 5  gcaagatggagaagcagggcacgtgcactacta 37
          ||||||||||||||||||||||||||| |||||
Sbjct: 5  gcaagatggagaagcagggcacgtgcattacta 37




>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
          Length = 99

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 4  agcaagatggagaagcagggcacgtgcactactaactcat 43
          |||| ||||||||||||||||||||||| | |||||||||
Sbjct: 4  agcatgatggagaagcagggcacgtgcaatgctaactcat 43




>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
          Length = 94

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 5  gcaagatggagaagcagggcacgtgcactact 36
          ||||||||||||||||||||||||||| ||||
Sbjct: 5  gcaagatggagaagcagggcacgtgcattact 36




>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
          Length = 84

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gatggagaagcagggcacgtgca 31
          |||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgca 31




>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
          Length = 133

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gatggagaagcagggcacgtgca 31
          |||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgca 31




>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
          (thale cress)
          Length = 102

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gatggagaagcagggcacgtgc 30
          ||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgc 30