miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
          trichocarpa
          Length = 84

 Score =  163 bits (82), Expect = 4e-40
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tagctcttgctggagaagcagggcacgtgcaagctctctcctcaagctttccttgcacgt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tagctcttgctggagaagcagggcacgtgcaagctctctcctcaagctttccttgcacgt 60

                                
Query: 61 gctccccttctccaacatgggt 82
          ||||||||||||||||||||||
Sbjct: 61 gctccccttctccaacatgggt 82




>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
          (castor bean)
          Length = 86

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 2  agctcttgctggagaagcagggcacgtgcaa 32
          |||||||||||||||||||||||||||||||
Sbjct: 2  agctcttgctggagaagcagggcacgtgcaa 32



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 53 ttgcacgtgctccccttctccaacatgggt 82
          ||||||||||||| ||||||||||||||||
Sbjct: 55 ttgcacgtgctccacttctccaacatgggt 84




>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
          Length = 119

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 52  cttgcacgtgctccccttctccaacatgggt 82
           |||||||||||||||||||||||||||||||
Sbjct: 87  cttgcacgtgctccccttctccaacatgggt 117



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 6  cttgctggagaagcagggcacgtgca 31
          |||| |||||||||||||||||||||
Sbjct: 6  cttgttggagaagcagggcacgtgca 31




>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
          (papaya)
          Length = 86

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 53 ttgcacgtgctccccttctccaacatgggt 82
          ||||||||||||||||||||||||||||||
Sbjct: 55 ttgcacgtgctccccttctccaacatgggt 84



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32




>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
          (papaya)
          Length = 86

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 53 ttgcacgtgctccccttctccaacatgggt 82
          ||||||||||||||||||||||||||||||
Sbjct: 55 ttgcacgtgctccccttctccaacatgggt 84



 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 2  agctcttgctggagaagcagggcacgtgcaa 32
          |||||||| ||||||||||||||||||||||
Sbjct: 2  agctcttgttggagaagcagggcacgtgcaa 32




>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
          Length = 95

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 53 ttgcacgtgctccccttctccaacatgggt 82
          ||||||||||||||||||||||||||||||
Sbjct: 64 ttgcacgtgctccccttctccaacatgggt 93



 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  cttgctggagaagcagggcacgtgcaa 32
          |||| ||||||||||||||||||||||
Sbjct: 6  cttgttggagaagcagggcacgtgcaa 32




>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
          Length = 84

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 54 tgcacgtgctccccttctccaacatgggt 82
          |||||||||||||||||||||||||||||
Sbjct: 54 tgcacgtgctccccttctccaacatgggt 82



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 2  agctcttgctggagaagcagggcacgtgca 31
          |||||||| |||||||||||||||||||||
Sbjct: 2  agctcttgatggagaagcagggcacgtgca 31




>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
           (castor bean)
          Length = 112

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 53  ttgcacgtgctccccttctccaacatgg 80
           ||||||||||||||||||||||||||||
Sbjct: 81  ttgcacgtgctccccttctccaacatgg 108



 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  tgctggagaagcagggcacgtgcaa 32
          |||||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgcaa 32




>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
          Length = 87

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  tagctcttgctggagaagcagggcacgtgcaa 32
          |||| |||||||||||||||||||||||||||
Sbjct: 1  tagcccttgctggagaagcagggcacgtgcaa 32




>RF00647;MIR164;AC189657.2/5377-5278 51351:Brassica rapa subsp.
          pekinensis
          Length = 100

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  cttgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||||
Sbjct: 6  cttgctggagaagcagggcacgtgc 30




>RF00647;MIR164;AC189579.2/50985-50886 51351:Brassica rapa subsp.
          pekinensis
          Length = 100

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  cttgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||||
Sbjct: 6  cttgctggagaagcagggcacgtgc 30




>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max (soybean)
          Length = 112

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 53  ttgcacgtgctccccttctccaaca 77
           |||||||||||||||||||||||||
Sbjct: 81  ttgcacgtgctccccttctccaaca 105



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32




>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  gctggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||||
Sbjct: 1  gctggagaagcagggcacgtgcaa 24




>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
          Length = 72

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  gctggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||||
Sbjct: 1  gctggagaagcagggcacgtgcaa 24




>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
          (barrel medic)
          Length = 95

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  tcttgctggagaagcagggcacgtgcaa 32
          ||||| ||||||||||||||||||||||
Sbjct: 5  tcttgttggagaagcagggcacgtgcaa 32




>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
          (sorghum)
          Length = 179

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 9  gctggagaagcagggcacgtgcaagctc 36
          ||||||||||||||||||||||| ||||
Sbjct: 9  gctggagaagcagggcacgtgcatgctc 36




>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
          Length = 87

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  tgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgc 30




>RF00647;MIR164;FM162588.1/798-884 310672:Cabomba aquatica
          Length = 87

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  tgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgc 30




>RF00647;MIR164;ABXC01002969.1/79278-79187 4558:Sorghum bicolor
          (sorghum)
          Length = 92

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  tgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgc 30




>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
           (sorghum)
          Length = 219

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 54  tgcacgtgctccccttctccaacatgg 80
           ||||||||||||||||||||| |||||
Sbjct: 189 tgcacgtgctccccttctccaccatgg 215




>RF00647;MIR164;AP004257.3/77813-77720 39947:Oryza sativa Japonica
          Group
          Length = 94

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  tgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgc 30




>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa Indica
           Group
          Length = 119

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 54  tgcacgtgctccccttctccaacatgg 80
           ||||||||||||||||||||| |||||
Sbjct: 89  tgcacgtgctccccttctccaccatgg 115




>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
          (thale cress)
          Length = 98

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32




>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
          (barrel medic)
          Length = 153

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32




>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
          Length = 295

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32




>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
          Length = 290

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32




>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
          Length = 99

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32