miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC216447.1/33715-33853 3694:Populus trichocarpa
          Length = 139

 Score =  268 bits (135), Expect = 2e-71
 Identities = 138/139 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 60

                                                                       
Query: 65  tatctgatgacagcccagataatcgatgcacctgtcttgaacctaaatgattctcggacc 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61  tatctgatgacagcccagataatcgatgcacctttcttgaacctaaatgattctcggacc 120

                              
Query: 125 aggctccattccttccaac 143
           |||||||||||||||||||
Sbjct: 121 aggctccattccttccaac 139




>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
          trichocarpa
          Length = 144

 Score = 93.7 bits (47), Expect = 6e-19
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                      
Query: 5  gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 64
          ||||||||||| | ||||||| |||||||||| ||||||||||||||||| | |||||||
Sbjct: 1  gttgagaggaatgttgtctggctcgaggtcattgaggccatgattatacagacatggcat 60

                         
Query: 65 tatctgatgacagcc 79
          || ||||||||||||
Sbjct: 61 tacctgatgacagcc 75




>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
           pekinensis
          Length = 87

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 104 aacctaaatgattctcggaccaggctccattcc 136
           |||||||||||||||||||||||||| ||||||
Sbjct: 48  aacctaaatgattctcggaccaggcttcattcc 80




>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 106 cctaaatgattctcggaccaggctccattcc 136
           |||||||||||||||||||||||| ||||||
Sbjct: 88  cctaaatgattctcggaccaggcttcattcc 118



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 5  gttgagaggaacgctgtctgggtcgaggtcatggagg 41
          ||||||||||| | ||||||| |||||||||||||||
Sbjct: 1  gttgagaggaatgttgtctggctcgaggtcatggagg 37




>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
           cress)
          Length = 111

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 106 cctaaatgattctcggaccaggctccattcc 136
           |||||||||||||||||||||||| ||||||
Sbjct: 74  cctaaatgattctcggaccaggcttcattcc 104




>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
           cress)
          Length = 100

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 107 ctaaatgattctcggaccaggctccattcc 136
           ||||||||||||||||||||||| ||||||
Sbjct: 64  ctaaatgattctcggaccaggcttcattcc 93




>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 5  gttgagaggaacgctgtctgggtcgaggtcatggag 40
          ||||||||||||| ||||||| ||||||| ||||||
Sbjct: 1  gttgagaggaacgttgtctggctcgaggtgatggag 36




>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
           (thale cress)
          Length = 118

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 106 cctaaatgattctcggaccaggctccattcc 136
           |||| ||||||||||||||||||| ||||||
Sbjct: 81  cctagatgattctcggaccaggcttcattcc 111