miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
           trichocarpa
          Length = 144

 Score =  285 bits (144), Expect = 8e-77
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gttgagaggaatgttgtctggctcgaggtcattgaggccatgattatacagacatggcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttgagaggaatgttgtctggctcgaggtcattgaggccatgattatacagacatggcat 60

                                                                       
Query: 65  tacctgatgacagccgagaaaattcaaagtctgtgtgtatcttgtacctcgatgattctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tacctgatgacagccgagaaaattcaaagtctgtgtgtatcttgtacctcgatgattctc 120

                                   
Query: 125 ggaccaggcttcattccttccaac 148
           ||||||||||||||||||||||||
Sbjct: 121 ggaccaggcttcattccttccaac 144




>RF00075;mir-166;AC216447.1/33715-33853 3694:Populus trichocarpa
          Length = 139

 Score = 93.7 bits (47), Expect = 6e-19
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                      
Query: 5  gttgagaggaatgttgtctggctcgaggtcattgaggccatgattatacagacatggcat 64
          ||||||||||| | ||||||| |||||||||| ||||||||||||||||| | |||||||
Sbjct: 1  gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 60

                         
Query: 65 tacctgatgacagcc 79
          || ||||||||||||
Sbjct: 61 tatctgatgacagcc 75




>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
          (papaya)
          Length = 125

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 5  gttgagaggaatgttgtctggctcgaggtcattgagg 41
          |||||||||||||||||||||||||||||||| ||||
Sbjct: 1  gttgagaggaatgttgtctggctcgaggtcatggagg 37



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 116 atgattctcggaccaggcttcattcc 141
           ||||||||||||||||||||||||||
Sbjct: 93  atgattctcggaccaggcttcattcc 118




>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
          Length = 157

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 5  gttgagaggaatgttgtctggctcgaggt 33
          |||||||||||||||||||||||||||||
Sbjct: 1  gttgagaggaatgttgtctggctcgaggt 29



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 117 tgattctcggaccaggcttcattcc 141
           |||||||||||||||||||||||||
Sbjct: 126 tgattctcggaccaggcttcattcc 150




>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
          (thale cress)
          Length = 118

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 5  gttgagaggaatgttgtctggctcgaggtcat 36
          |||||||||| |||||||||||||||||||||
Sbjct: 1  gttgagaggattgttgtctggctcgaggtcat 32



 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 115 gatgattctcggaccaggcttcattcc 141
           |||||||||||||||||||||||||||
Sbjct: 85  gatgattctcggaccaggcttcattcc 111




>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana
          (thale cress)
          Length = 111

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 5  gttgagaggaatgttgtctggctcgaggtcat 36
          |||||||||||| |||||||||||||||||||
Sbjct: 1  gttgagaggaatattgtctggctcgaggtcat 32



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 116 atgattctcggaccaggcttcattcc 141
           ||||||||||||||||||||||||||
Sbjct: 79  atgattctcggaccaggcttcattcc 104




>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
          Length = 148

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 5  gttgagaggaatgttgtctggctcgaggtca 35
          |||||| ||||||||||||||||||||||||
Sbjct: 1  gttgaggggaatgttgtctggctcgaggtca 31




>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa
          subsp. pekinensis
          Length = 87

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 7  tgagaggaatgttgtctggctcgaggtcat 36
          |||||||| |||||||||||||||||||||
Sbjct: 3  tgagaggactgttgtctggctcgaggtcat 32



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 116 atgattctcggaccaggcttcattcc 141
           ||||||||||||||||||||||||||
Sbjct: 55  atgattctcggaccaggcttcattcc 80




>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
           cress)
          Length = 100

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 116 atgattctcggaccaggcttcattcc 141
           ||||||||||||||||||||||||||
Sbjct: 68  atgattctcggaccaggcttcattcc 93



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 9  agaggaatgttgtctggctcgaggtcat 36
          ||||||||||||| ||||||||||||||
Sbjct: 5  agaggaatgttgtttggctcgaggtcat 32




>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
          trichocarpa
          Length = 155

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 6  ttgagaggaatgttgtctggctcgaggtca 35
          ||||| ||||||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgaggtca 31




>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
          (castor bean)
          Length = 121

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 6  ttgagaggaatgttgtctggctcgaggtca 35
          ||||| ||||||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgaggtca 31




>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 5  gttgagaggaatgttgtctggctcgaggt 33
          ||||||||||| |||||||||||||||||
Sbjct: 1  gttgagaggaacgttgtctggctcgaggt 29




>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
          tobacco)
          Length = 185

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 7  tgagaggaatgttgtctggctcgaggtca 35
          |||| ||||||||||||||||||||||||
Sbjct: 1  tgaggggaatgttgtctggctcgaggtca 29




>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
          Length = 98

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 12 ggaatgttgtctggctcgaggtcat 36
          |||||||||||||||||||||||||
Sbjct: 8  ggaatgttgtctggctcgaggtcat 32




>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
          (papaya)
          Length = 136

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 6  ttgagaggaatgttgtctggctcgaggtcatt 37
          ||||| ||||||||||||||||||||| ||||
Sbjct: 2  ttgaggggaatgttgtctggctcgaggacatt 33




>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
           (barrel medic)
          Length = 170

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 121 tctcggaccaggcttcattccttccaac 148
           |||||||||||||||||||||| |||||
Sbjct: 143 tctcggaccaggcttcattcctaccaac 170




>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
           (barrel medic)
          Length = 105

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 119 attctcggaccaggcttcattcct 142
           ||||||||||||||||||||||||
Sbjct: 76  attctcggaccaggcttcattcct 99




>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 121 tctcggaccaggcttcattccttccaac 148
           |||||||||||||||||||||| |||||
Sbjct: 61  tctcggaccaggcttcattcctcccaac 88




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  ttgagaggaatgttgtctggctcgaggt 33
          ||||| ||||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgaggt 29




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
          (sorghum)
          Length = 97

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  ttgagaggaatgttgtctggctcgaggt 33
          ||||| ||||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgaggt 29




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
          Japonica Group
          Length = 103

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  ttgagaggaatgttgtctggctcgaggt 33
          ||||| ||||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgaggt 29




>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
          Length = 317

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 121 tctcggaccaggcttcattcctt 143
           |||||||||||||||||||||||
Sbjct: 290 tctcggaccaggcttcattcctt 312




>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
          Length = 324

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 121 tctcggaccaggcttcattcctt 143
           |||||||||||||||||||||||
Sbjct: 297 tctcggaccaggcttcattcctt 319




>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
          trichocarpa
          Length = 134

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  ttgagaggaatgttgtctggctcgagg 32
          ||||| |||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgagg 28




>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus
          trichocarpa
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  ttgagaggaatgttgtctggctcgagg 32
          ||||| |||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgagg 28




>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  ttgagaggaatgttgtctggctcgagg 32
          ||||| |||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgagg 28




>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
          (barrel medic)
          Length = 107

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  ttgagaggaatgttgtctggctcgagg 32
          ||||| |||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgagg 28



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 119 attctcggaccaggcttcattcc 141
           |||||||||||||||||||||||
Sbjct: 78  attctcggaccaggcttcattcc 100




>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  ttgagaggaatgttgtctggctcgagg 32
          ||||| |||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgagg 28




>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 7  tgagaggaatgttgtctggctcgaggt 33
          ||||||||| |||||||||||||||||
Sbjct: 3  tgagaggaacgttgtctggctcgaggt 29




>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
          Length = 156

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  ttgagaggaatgttgtctggctcgagg 32
          ||||| |||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgagg 28




>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
          Length = 150

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  ttgagaggaatgttgtctggctcgagg 32
          ||||| |||||||||||||||||||||
Sbjct: 2  ttgaggggaatgttgtctggctcgagg 28




>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
           cotton)
          Length = 113

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 tctcggaccaggcttcattcct 142
           ||||||||||||||||||||||
Sbjct: 86  tctcggaccaggcttcattcct 107




>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
           (barrel medic)
          Length = 181

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 tctcggaccaggcttcattcct 142
           ||||||||||||||||||||||
Sbjct: 154 tctcggaccaggcttcattcct 175




>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
          Length = 166

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 tctcggaccaggcttcattcct 142
           ||||||||||||||||||||||
Sbjct: 139 tctcggaccaggcttcattcct 160




>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
          Length = 103

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 120 ttctcggaccaggcttcattcc 141
           ||||||||||||||||||||||
Sbjct: 75  ttctcggaccaggcttcattcc 96




>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
          Length = 122

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 tctcggaccaggcttcattcct 142
           ||||||||||||||||||||||
Sbjct: 95  tctcggaccaggcttcattcct 116




>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
           (sorghum)
          Length = 116

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 tctcggaccaggcttcattcct 142
           ||||||||||||||||||||||
Sbjct: 89  tctcggaccaggcttcattcct 110




>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
          Indica Group
          Length = 87

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  gttgagaggaatgttgtctggc 26
          ||||||||||||||||||||||
Sbjct: 1  gttgagaggaatgttgtctggc 22




>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
           Japonica Group
          Length = 135

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 tctcggaccaggcttcattcct 142
           ||||||||||||||||||||||
Sbjct: 108 tctcggaccaggcttcattcct 129