miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 121 bits (61), Expect = 2e-27
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 ctatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaag-aacag 61
|||||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||
Sbjct: 6 ctatcagttgaagctgccagcatgatcttagccttcctcctttgttgaggaaagaaacag 65
Query: 62 atcatgtggcagtttcacctg 82
|||||||||||||||||||||
Sbjct: 66 atcatgtggcagtttcacctg 86
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaagaaca 60
||||| |||||||||||||||||||||||||||| ||||||| | || | ||||||| ||
Sbjct: 4 cactaccagttgaagctgccagcatgatcttaacttccctccatggt-ggggaaagatca 62
Query: 61 gatcatgtggcagtttcacct 81
|||||||||||||||||||||
Sbjct: 63 gatcatgtggcagtttcacct 83
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 95.6 bits (48), Expect = 9e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatcttaacctccctcctttgtcgaggaaagaaca 60
|||||||||||||||||||||||||||||| || || ||||| | || ||||| ||| ||
Sbjct: 4 cactatcagttgaagctgccagcatgatctaaatcttcctccctcgttgaggagagatca 63
Query: 61 gatcatgtggcagtttcacc 80
||||||||||||||||||||
Sbjct: 64 gatcatgtggcagtttcacc 83
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 69.9 bits (35), Expect = 5e-12
Identities = 73/83 (87%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatcttaacctccct-cctttgtcgaggaaagaac 59
|||||||||||||||||||||||||||||| ||| | | | ||||||| || | ||| |
Sbjct: 4 cactatcagttgaagctgccagcatgatctaaacttgcttccctttgt-gaacagagatc 62
Query: 60 agatcatgtggcagtttcacctg 82
|||||||||||||||||||||||
Sbjct: 63 agatcatgtggcagtttcacctg 85
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 atcagttgaagctgccagcatgatcttaacctc 37
||||| |||||||||||||||||||||||||||
Sbjct: 8 atcagatgaagctgccagcatgatcttaacctc 40
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 47 tcgaggaaagaacagatcatgtggcag 73
||||||||||| |||||||||||||||
Sbjct: 61 tcgaggaaagatcagatcatgtggcag 87
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 48 cgaggaaagaacagatcatgtggcagtttcacctg 82
|||||||||| ||||||||||||||| |||||||
Sbjct: 55 cgaggaaagatcagatcatgtggcagcatcacctg 89
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 7 cagttgaagctgccagcatgatcttaacctccct 40
|||||||||||||||||||||||| ||| |||||
Sbjct: 10 cagttgaagctgccagcatgatctcaacttccct 43
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 41 cctttgtcgaggaaagaacagatcatgtggcagtttcacctg 82
||||| || |||||||| |||||||||||||||||||||||
Sbjct: 53 cctttctccaggaaagactagatcatgtggcagtttcacctg 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 cagttgaagctgccagcatgatct 30
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 cagttgaagctgccagcatgatct 30
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 cagttgaagctgccagcatgatct 30
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 cagttgaagctgccagcatgatct 30
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatct 30
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatct 30
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 agatcatgtggcagtttcacctg 82
|||||||||||||||||||||||
Sbjct: 59 agatcatgtggcagtttcacctg 81
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cactatcagttgaagctgccagcatgatct 30
||||| ||||| ||||||||||||||||||
Sbjct: 4 cactagcagttaaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
