miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00097;snoR71;AARH01033720.1/381-273 3694:Populus trichocarpa
Length = 109
Score = 81.8 bits (41), Expect = 2e-15
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 5 caatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttt 57
||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 53 caatgttgggatagatatcgagacttgcttaatacttgcccccatcatggttt 1
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 94 aagtattaagcatgtctcgataccaatcccaacattggtaa 134
|||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 17 aagtattaagcaagtctcgatatctatcccaacattggtaa 57
>RF00097;snoR71;AARH01001277.1/87421-87310 3694:Populus
trichocarpa
Length = 112
Score = 75.8 bits (38), Expect = 1e-13
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 1 ttatcaatgttgggatacatatcgagacttgcttaatac-ttgccttcatcatggttt 57
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 58 ttatcaatgttgggataggtatcgagacttgcttaatactttgccctcatcatggttt 1
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
|||||||||||| ||||||||||| ||||||||||||
Sbjct: 18 aagtattaagcaagtctcgatacctatcccaacattg 54
>RF00097;snoR71;AC216769.1/73785-73677 3694:Populus trichocarpa
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 8 tgttgggatacatatcgagacttgcttaatacttgccttcatcatggttt 57
|||||||||| |||| ||||||||||||||| || | ||||||||||||
Sbjct: 50 tgttgggatagatataaagacttgcttaatacctgtcctcatcatggttt 1
>RF00097;snoR71;AARH01001422.1/144978-144872 3694:Populus
trichocarpa
Length = 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 99 ttaagcatgtctcgataccaatcccaacattggtaa 134
||||||| ||| ||||||| ||||||||||||||||
Sbjct: 20 ttaagcaagtcccgatacctatcccaacattggtaa 55
