miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00097;snoR71;AARH01033720.1/381-273 3694:Populus trichocarpa
Length = 109
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1 tgttgggatacatatcgagacttgcttaatacttgccttcatcatggttt 50
|||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 50 tgttgggatagatatcgagacttgcttaatacttgcccccatcatggttt 1
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 87 aagtattaagcatgtctcgataccaatcccaaca 120
|||||||||||| ||||||||| | |||||||||
Sbjct: 17 aagtattaagcaagtctcgatatctatcccaaca 50
>RF00097;snoR71;AARH01001277.1/87421-87310 3694:Populus
trichocarpa
Length = 112
Score = 61.9 bits (31), Expect = 2e-09
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1 tgttgggatacatatcgagacttgcttaatac-ttgccttcatcatggttt 50
|||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 51 tgttgggataggtatcgagacttgcttaatactttgccctcatcatggttt 1
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 87 aagtattaagcatgtctcgataccaatcccaaca 120
|||||||||||| ||||||||||| |||||||||
Sbjct: 18 aagtattaagcaagtctcgatacctatcccaaca 51
>RF00097;snoR71;AC216769.1/73785-73677 3694:Populus trichocarpa
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1 tgttgggatacatatcgagacttgcttaatacttgccttcatcatggttt 50
|||||||||| |||| ||||||||||||||| || | ||||||||||||
Sbjct: 50 tgttgggatagatataaagacttgcttaatacctgtcctcatcatggttt 1
