miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AC214031.1/18532-18633 3694:Populus trichocarpa
          Length = 102

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 67  taatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagacccaata 126
           ||||||||||||||||| |||||||||||| ||| | | |||||||  | || |||||||
Sbjct: 102 taatattaaacttgcataacccaagtttaagtggatgtggctgcaacgctaggcccaata 43

                  
Query: 127 gtcttgg 133
           | |||||
Sbjct: 42  gccttgg 36




>RF00779;MIR474;AARH01000415.1/165191-165292 3694:Populus
          trichocarpa
          Length = 102

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                         
Query: 25 ctgcaacgcctgacctaagagtgatatttat 55
          ||||||||| |||||||||||| ||||||||
Sbjct: 31 ctgcaacgcttgacctaagagtaatatttat 1




>RF00779;MIR474;AARH01003079.1/85941-85857 3694:Populus trichocarpa
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 98  tgggtctagctgcaataccagacccaatagtcttg 132
           |||||||||||||||| |||| |||||| ||||||
Sbjct: 38  tgggtctagctgcaatgccaggcccaattgtcttg 4




>RF00779;MIR474;AARH01001618.1/1118-1018 3694:Populus trichocarpa
          Length = 101

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                        
Query: 1  tatacccaagaatcttgggtttggctgcaacgcctgacctaagagt 46
          |||||||||||  ||||||| | |||||||||| ||||| ||||||
Sbjct: 54 tatacccaagagccttgggtctagctgcaacgcttgacccaagagt 9