miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02010757.1/37415-37572 39946:Oryza sativa
          Indica Group
          Length = 158

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  atgtactccctctgtcccagaatat 30
          |||||||||||||||||||||||||
Sbjct: 2  atgtactccctctgtcccagaatat 26





>RF00906;MIR1122;AACV01011494.1/5583-5447 39947:Oryza sativa
          Japonica Group
          Length = 137

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tactccctctgtcccagaatat 30
          ||||||||||||||||||||||
Sbjct: 5  tactccctctgtcccagaatat 26





>RF00906;MIR1122;AAAA02030078.1/8056-7936 39946:Oryza sativa
          Indica Group
          Length = 121

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tactccctctgtcccagaatat 30
          ||||||||||||||||||||||
Sbjct: 5  tactccctctgtcccagaatat 26





>RF00906;MIR1122;AC136522.3/138087-137951 39947:Oryza sativa
           Japonica Group
          Length = 137

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tactccctctgtcccagaatat 30
           ||||||||||||||||||||||
Sbjct: 133 tactccctctgtcccagaatat 112





>RF00906;MIR1122;AAAA02015954.1/10941-11097 39946:Oryza sativa
          Indica Group
          Length = 157

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tactccctctgtcccagaatat 30
          ||||||||||||||||||||||
Sbjct: 5  tactccctctgtcccagaatat 26





>RF00906;MIR1122;AL606455.3/44444-44562 39947:Oryza sativa Japonica
           Group
          Length = 119

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tactccctctgtcccagaatat 30
           ||||||||||||||||||||||
Sbjct: 115 tactccctctgtcccagaatat 94