miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 65.9 bits (33), Expect = 1e-10
Identities = 77/91 (84%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 9 accactatcagatgaagctgccagcgtgatctcaacttttct---ggtctcttaaaggaa 65
||||||| ||| ||||||||||||| |||||| ||||||||| | || | |||||
Sbjct: 2 accactagcagttgaagctgccagcatgatctaaacttttctattgctccgtacgaggaa 61
Query: 66 agatcagatcatgtggcagcttcacctgttg 96
|||||||||||||||||||| ||||||||||
Sbjct: 62 agatcagatcatgtggcagcatcacctgttg 92
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 60 aaggaaagatcagatcatgtggcagcttcacctgttgctggg 101
|||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 53 aaggaaagatcagatcatgtggtagcctcacctgttgatggg 94
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 62 ggaaagatcagatcatgtggcagcttcacct 92
||||||||||||||||||||||| |||||||
Sbjct: 53 ggaaagatcagatcatgtggcagtttcacct 83
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 8 caccactatcagatgaagctgccagcgtgatctcaactt 46
|||||||| ||| ||||||||||||| |||||| |||||
Sbjct: 1 caccactaccagttgaagctgccagcatgatcttaactt 39
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 8 caccactatcagatgaagctgccagcgtgatctcaactt 46
|||||||||||| ||||||||||||| |||||| |||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaactt 39
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 agatcagatcatgtggcagcttcacctgttg 96
||||||||||||||||||| |||||||||||
Sbjct: 58 agatcagatcatgtggcagtttcacctgttg 88
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 61 aggaaagatcagatcatgtggcagcttcacctgt 94
||||||||||||||||||||||||| | ||||||
Sbjct: 64 aggaaagatcagatcatgtggcagccttacctgt 97
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 caccactatcagatgaagctgccagcgtgatct 40
|||||||||||| ||||||||||||| ||||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 60 aaggaaagatcagatcatgtggcagcttcacctgttg 96
||||| |||| ||||||||||| ||||||||||||||
Sbjct: 59 aaggatagattagatcatgtggtagcttcacctgttg 95
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 61 aggaaagatcagatcatgtggcagcttcacctgttg 96
|||||||| |||||||||||||| |||||||||||
Sbjct: 62 aggaaagactagatcatgtggcagtttcacctgttg 97
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 cagatcatgtggcagcttcacctgttg 96
||||||||||||||| |||||||||||
Sbjct: 63 cagatcatgtggcagtttcacctgttg 89
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 72 gatcatgtggcagcttcacctgttgctggg 101
|||||||||| |||||||||||||| ||||
Sbjct: 64 gatcatgtggtagcttcacctgttgttggg 93
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 atcagatgaagctgccagcgtgatct 40
||||||||||||||||||| ||||||
Sbjct: 8 atcagatgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 agatcatgtggcagcttcacctgttg 96
|||||||||||||| |||||||||||
Sbjct: 59 agatcatgtggcagtttcacctgttg 84
