miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 69.9 bits (35), Expect = 1e-11
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
||||||||||||||||||||| ||||| | |||| ||||| || |||||||||| |||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
Query: 70 gattccacagtccta 84
|| ||||||||||||
Sbjct: 70 ga-tccacagtccta 83
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 ggataggcttgcggcttgcatatgttaggagcttt 138
||||||| ||||||||||||||| | |||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagcttt 131
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 65.9 bits (33), Expect = 2e-10
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 119 ttgcatatgttaggagcttt--tttacctctttgttttatctttctttggattgaaggga 176
|||||||||| ||||||||| |||||| |||||||| ||| || |||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 182
Query: 177 gctctaca 184
||||||||
Sbjct: 183 gctctaca 190
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 58.0 bits (29), Expect = 5e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 113 tgcggcttgcatatgttaggagcttttttacctctttgttttatctttctttggattgaa 172
|||||||||||||| | ||||||||| |||||| | ||| |||||| |||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaa 156
Query: 173 gggagctct 181
|||||||||
Sbjct: 157 gggagctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 104 ggataggcttgcggcttgcatatgttaggagcttttttacctctttgttttatctttctt 163
||||||||||| ||||||||||| | |||||||| |||||| | | || ||| || ||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 163
Query: 164 tggattgaagggagctctaca 184
|||||||||||||||||||||
Sbjct: 164 tggattgaagggagctctaca 184
Score = 54.0 bits (27), Expect = 7e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
||||||||||||||||||||| ||||||| ||| ||||| || ||||||| | |||||
Sbjct: 10 gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 69
Query: 70 gattccacagtccta 84
||| |||||| ||||
Sbjct: 70 gatcccacagcccta 84
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaaaagagga-tttgcagggtaaatcaagctgctaatctatggat 72
|||||||||||||||||| |||||| |||||||||| || |||||| | ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 73 tccacagtccta 84
||||||| ||||
Sbjct: 73 tccacagcccta 84
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctacac 185
||||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctacac 185
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctaca 184
||||||||||||||||||||||||||
Sbjct: 169 ttctttggattgaagggagctctaca 194
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctacac 185
||||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctacac 185
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagagg 37
||||||||||||||||||||| |||||
Sbjct: 10 gtggagctccttgaagtccaatagagg 36
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctct 181
|||||||||||||||||||||||
Sbjct: 173 ttctttggattgaagggagctct 195
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 ttggattgaagggagctctacac 185
|||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacac 181
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
