miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AASG02000270.1/34976-34853 3988:Ricinus communis
          (castor bean)
          Length = 124

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 43 agtggaactgagccaaggatgacttgccgcgc 74
          |||||| |||||||||||||||||||||||||
Sbjct: 3  agtggacctgagccaaggatgacttgccgcgc 34

>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
          trichocarpa
          Length = 111

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 41 agagtggaactgagccaaggatgacttgccgc 72
          ||||||||  ||||||||||||||||||||||
Sbjct: 1  agagtggatttgagccaaggatgacttgccgc 32

>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
          Length = 102

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 44 gtggaactgagccaaggatgacttgccg 71
          |||||| |||||||||||||||||||||
Sbjct: 4  gtggaattgagccaaggatgacttgccg 31

>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
          (thale cress)
          Length = 127

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tggaactgagccaaggatgacttgccg 71
          ||||| |||||||||||||||||||||
Sbjct: 5  tggaattgagccaaggatgacttgccg 31

>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
          Length = 103

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 tgagccaaggatgacttgccgc 72
          ||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgc 32

>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
          Length = 101

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 42 gagtggaactgagccaaggatgacttgccg 71
          ||||||||  ||||||||||||||||||||
Sbjct: 2  gagtggaatagagccaaggatgacttgccg 31