miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 85.7 bits (43), Expect = 1e-16
Identities = 85/95 (89%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 20 ctggaggcagcggttcatcgatctcttcctggagattttttgttctg-aactgcaat-aa 77
||||||||||||||||||||||||||||||||| | ||||||| || ||| ||| ||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctgga-agattttgttgtgaaacaaaaataaa 61
Query: 78 acacatgaatcgatcgataaacctctgcatccagc 112
|| ||||||||||||||||||||||||||||||||
Sbjct: 62 acgcatgaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 67.9 bits (34), Expect = 3e-11
Identities = 80/94 (85%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 20 ctggaggcagcggttcatcgatctcttcctgg-agattttttgttctgaactgcaataaa 78
|||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctggccaattttttgtt-----tagcacgaaa 57
Query: 79 cacatgaatcgatcgataaacctctgcatccagc 112
||||||| |||||||||||||||||||||||||
Sbjct: 58 aacatgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 80 acatgaatcgatcgataaacctctgcatccagc 112
|||||||||||||||||||||||||||||||||
Sbjct: 59 acatgaatcgatcgataaacctctgcatccagc 91
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 20 ctggaggcagcggttcatcgatctcttcctgg 51
||||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctgg 34
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 18 cgctggaggcagcggttcatcgatctcttcctg 50
|||||||||||||||||||||||||||||||||
Sbjct: 1 cgctggaggcagcggttcatcgatctcttcctg 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 81 catgaatcgatcgataaacctctgcatccagc 112
||||||| ||||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 3 ctggaggcagcggttcatcgatcttttcctgaagatttttt 43
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 84 gaatcgatcgataaacctctgcatccagc 112
|||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 cgctggaggcagcggttcatcgatc 42
|||||||||||||||||||||||||
Sbjct: 1 cgctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 80 acatgaatcgatcgataaacctctgcatccagc 112
|||||||||| ||||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccagc 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 ctggaggcagcggttcatcgatctcttcctg 50
||||| |||||||||||||||||| ||||||
Sbjct: 3 ctggatgcagcggttcatcgatctgttcctg 33
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 84 gaatcgatcgataaacctctgcatccagc 112
|||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 84 gaatcgatcgataaacctctgcatccag 111
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 84 gaatcgatcgataaacctctgcatccag 111
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 ctggaggcagcggttcatcgatctcttcctg 50
||||| |||||||||||||||||||||||||
Sbjct: 3 ctggatgcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 84 gaatcgatcgataaacctctgcatccagc 112
|||||| ||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 84 gaatcgatcgataaacctctgcatccagc 112
|||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gctggaggcagcggttcatcgatctctt 46
|||||||||||||||| |||||||||||
Sbjct: 2 gctggaggcagcggttgatcgatctctt 29
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 gaatcgatcgataaacctctgcatccag 111
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
