miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
           (castor bean)
          Length = 96

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 85/95 (89%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                       
Query: 21  ctggaggcagcggttcatcgatctcttcctggagattttttgttctg-aactgcaat-aa 78
           ||||||||||||||||||||||||||||||||| |  ||||||| || |||   ||| ||
Sbjct: 3   ctggaggcagcggttcatcgatctcttcctgga-agattttgttgtgaaacaaaaataaa 61

                                              
Query: 79  acacatgaatcgatcgataaacctctgcatccagc 113
           || ||||||||||||||||||||||||||||||||
Sbjct: 62  acgcatgaatcgatcgataaacctctgcatccagc 96




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
           trichocarpa
          Length = 91

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 80/94 (85%), Gaps = 6/94 (6%)
 Strand = Plus / Plus

                                                                       
Query: 21  ctggaggcagcggttcatcgatctcttcctgg-agattttttgttctgaactgcaataaa 79
           ||||||||||||||||||||||||||||||||   ||||||||||       |||  |||
Sbjct: 3   ctggaggcagcggttcatcgatctcttcctggccaattttttgtt-----tagcacgaaa 57

                                             
Query: 80  cacatgaatcgatcgataaacctctgcatccagc 113
            ||||||| |||||||||||||||||||||||||
Sbjct: 58  aacatgaaccgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
           (papaya)
          Length = 91

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 81  acatgaatcgatcgataaacctctgcatccagc 113
           |||||||||||||||||||||||||||||||||
Sbjct: 59  acatgaatcgatcgataaacctctgcatccagc 91



 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 21 ctggaggcagcggttcatcgatctcttcctgg 52
          ||||||||||||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctgg 34




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 19 cgctggaggcagcggttcatcgatctcttcctg 51
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cgctggaggcagcggttcatcgatctcttcctg 33



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 82  catgaatcgatcgataaacctctgcatccagc 113
           ||||||| ||||||||||||||||||||||||
Sbjct: 57  catgaatagatcgataaacctctgcatccagc 88




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 21 ctggaggcagcggttcatcgatctcttcctggagatttttt 61
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 3  ctggaggcagcggttcatcgatcttttcctgaagatttttt 43




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
           (thale cress)
          Length = 91

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 85  gaatcgatcgataaacctctgcatccagc 113
           |||||||||||||||||||||||||||||
Sbjct: 63  gaatcgatcgataaacctctgcatccagc 91



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 cgctggaggcagcggttcatcgatc 43
          |||||||||||||||||||||||||
Sbjct: 1  cgctggaggcagcggttcatcgatc 25




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
           (barrel medic)
          Length = 90

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 81  acatgaatcgatcgataaacctctgcatccagc 113
           |||||||||| ||||||||||||||||||||||
Sbjct: 58  acatgaatcggtcgataaacctctgcatccagc 90



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
          ||||| |||||||||||||||||| ||||||
Sbjct: 3  ctggatgcagcggttcatcgatctgttcctg 33




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 85  gaatcgatcgataaacctctgcatccagc 113
           |||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 85  gaatcgatcgataaacctctgcatccag 112
           ||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 85  gaatcgatcgataaacctctgcatccag 112
           ||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
          ||||| |||||||||||||||||||||||||
Sbjct: 3  ctggatgcagcggttcatcgatctcttcctg 33



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 85  gaatcgatcgataaacctctgcatccagc 113
           |||||| ||||||||||||||||||||||
Sbjct: 60  gaatcggtcgataaacctctgcatccagc 88




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 85  gaatcgatcgataaacctctgcatccagc 113
           |||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133




>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
          subsp. pekinensis
          Length = 92

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 20 gctggaggcagcggttcatcgatctctt 47
          |||||||||||||||| |||||||||||
Sbjct: 2  gctggaggcagcggttgatcgatctctt 29




>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
           Japonica Group
          Length = 117

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 85  gaatcgatcgataaacctctgcatccag 112
           |||||||||||||| |||||||||||||
Sbjct: 89  gaatcgatcgataagcctctgcatccag 116