miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01009234.1/70247-70410 3694:Populus
trichocarpa
Length = 164
Score = 67.9 bits (34), Expect = 2e-10
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 33 agataagagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||||||||| |||||||||||||||||||
Sbjct: 164 agataagagtcttgtttgatagccaaggatgacttgcc 127
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 67.9 bits (34), Expect = 2e-10
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 33 agataagagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||||||||| |||||||||||||||||||
Sbjct: 152 agataagagtcttgtttgatagccaaggatgacttgcc 115
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 61.9 bits (31), Expect = 1e-08
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 33 agataagagtcttgtttgctagccaaggatgacttgccc 71
||||||||||| |||||| ||||||||||||||||||||
Sbjct: 133 agataagagtcgtgtttggtagccaaggatgacttgccc 95
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 61.9 bits (31), Expect = 1e-08
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 36 taagagtcttgtttgctagccaaggatgacttgcc 70
||||||||||||||| |||||||||||||||||||
Sbjct: 136 taagagtcttgtttggtagccaaggatgacttgcc 102
>RF00865;MIR169_5;ABIM01014270.1/4571-4728 3649:Carica papaya
(papaya)
Length = 158
Score = 60.0 bits (30), Expect = 4e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 33 agataagagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||||||||| |||||||| ||||||||||
Sbjct: 158 agataagagtcttgtttggtagccaagaatgacttgcc 121
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 60.0 bits (30), Expect = 4e-08
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||||| |||||||||||||||||||
Sbjct: 139 aagagtcttgtttggtagccaaggatgacttgcc 106
>RF00865;MIR169_5;AARH01000583.1/30355-30198 3694:Populus
trichocarpa
Length = 158
Score = 60.0 bits (30), Expect = 4e-08
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||||| |||||||||||||||||||
Sbjct: 154 aagagtcttgtttgatagccaaggatgacttgcc 121
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 60.0 bits (30), Expect = 4e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcccgct 74
|||||| ||||||| |||||||||||||||||||||||
Sbjct: 123 aagagtgttgtttggtagccaaggatgacttgcccgct 86
>RF00865;MIR169_5;CAAP02000001.1/222751-222589 29760:Vitis vinifera
Length = 163
Score = 60.0 bits (30), Expect = 4e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 33 agataagagtcttgtttgctagccaaggatgacttgcc 70
||||||||||||||| || |||||||||||||||||||
Sbjct: 163 agataagagtcttgtctgatagccaaggatgacttgcc 126
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 54.0 bits (27), Expect = 3e-06
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgccc 71
||||||| |||||| ||||||||||||||||||||
Sbjct: 128 aagagtcgtgtttggtagccaaggatgacttgccc 94
>RF00865;MIR169_5;AARH01002590.1/191263-191135 3694:Populus
trichocarpa
Length = 129
Score = 54.0 bits (27), Expect = 3e-06
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 33 agataagagtcttgtttgctagccaaggatgacttgccc 71
|||||||||||||||||| |||||||||| |||||||||
Sbjct: 129 agataagagtcttgtttg-tagccaaggacgacttgccc 92
>RF00645;MIR169_2;AARH01000583.1/30205-30349 3694:Populus
trichocarpa
Length = 145
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||||||||||||||
Sbjct: 1 agtcttgtttgatagccaaggatgacttgcc 31
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||||||||||||||
Sbjct: 1 agtcttgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AC216452.1/111514-111664 3694:Populus
trichocarpa
Length = 151
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||||||||||||||
Sbjct: 1 agtcttgtttgatagccaaggatgacttgcc 31
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||||||||||||||
Sbjct: 1 agtcttgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||||||||||||||
Sbjct: 1 agtcttgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||||||||||||||
Sbjct: 1 agtcttgtttgatagccaaggatgacttgcc 31
>RF00865;MIR169_5;AASG02003941.1/7918-8066 3988:Ricinus communis
(castor bean)
Length = 149
Score = 52.0 bits (26), Expect = 1e-05
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
||||||||||| || |||||||||||||||||||
Sbjct: 145 aagagtcttgtctgatagccaaggatgacttgcc 112
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 52.0 bits (26), Expect = 1e-05
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
|||||||| ||||| |||||||||||||||||||
Sbjct: 147 aagagtctcgtttggtagccaaggatgacttgcc 114
>RF00865;MIR169_5;AASG02003632.1/6431-6569 3988:Ricinus communis
(castor bean)
Length = 139
Score = 52.0 bits (26), Expect = 1e-05
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||||| |||||||| ||||||||||
Sbjct: 135 aagagtcttgtttgatagccaagaatgacttgcc 102
>RF00865;MIR169_5;CU468266.5/4267-4422 3880:Medicago truncatula
(barrel medic)
Length = 156
Score = 52.0 bits (26), Expect = 1e-05
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
||||||| |||||| |||||||||||||||||||
Sbjct: 151 aagagtcatgtttgatagccaaggatgacttgcc 118
>RF00865;MIR169_5;AARH01003347.1/64815-64952 3694:Populus
trichocarpa
Length = 138
Score = 50.1 bits (25), Expect = 4e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 33 agataagagtcttgtttgctagccaaggatgacttgc 69
|||||||||| ||||| |||||||||||||||||||
Sbjct: 138 agataagagtgctgttttctagccaaggatgacttgc 102
>RF00865;MIR169_5;AASG02002697.1/23918-24046 3988:Ricinus communis
(castor bean)
Length = 129
Score = 50.1 bits (25), Expect = 4e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 593 cgggcagtctccttggctactcagacagactct 625
|||||||||||||||||||| ||||||| ||||
Sbjct: 39 cgggcagtctccttggctacacagacagcctct 7
Score = 48.1 bits (24), Expect = 2e-04
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcccg 72
||||||||| |||| |||||||||||||||||||||
Sbjct: 125 aagagtctt-tttgttagccaaggatgacttgcccg 91
>RF00645;MIR169_2;AASG02002697.1/24039-23924 3988:Ricinus communis
(castor bean)
Length = 116
Score = 50.1 bits (25), Expect = 4e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 593 cgggcagtctccttggctactcagacagactct 625
|||||||||||||||||||| ||||||| ||||
Sbjct: 84 cgggcagtctccttggctacacagacagcctct 116
>RF00865;MIR169_5;AARH01000472.1/145345-145210 3694:Populus
trichocarpa
Length = 136
Score = 48.1 bits (24), Expect = 2e-04
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 35 ataagagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||||| | |||||||||| ||||||||
Sbjct: 134 ataagagtcttgttagttagccaaggacgacttgcc 99
>RF00865;MIR169_5;AASG02003941.1/7647-7771 3988:Ricinus communis
(castor bean)
Length = 125
Score = 48.1 bits (24), Expect = 2e-04
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 45 tgtttgctagccaaggatgacttgcccgcttcacta 80
|||||| |||||||||||||||||||| || |||||
Sbjct: 113 tgtttgatagccaaggatgacttgcccactccacta 78
>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
trichocarpa
Length = 120
Score = 48.1 bits (24), Expect = 2e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgccc 71
|||| |||||| ||||||||||||||||||||
Sbjct: 1 agtcgtgtttggtagccaaggatgacttgccc 32
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 48.1 bits (24), Expect = 2e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgccc 71
|||| |||||| ||||||||||||||||||||
Sbjct: 1 agtcgtgtttggtagccaaggatgacttgccc 32
>RF00645;MIR169_2;AASG02003941.1/7763-7653 3988:Ricinus communis
(castor bean)
Length = 111
Score = 48.1 bits (24), Expect = 2e-04
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 45 tgtttgctagccaaggatgacttgcccgcttcacta 80
|||||| |||||||||||||||||||| || |||||
Sbjct: 5 tgtttgatagccaaggatgacttgcccactccacta 40
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 46.1 bits (23), Expect = 7e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 ttgtttgctagccaaggatgacttgcc 70
||||||| |||||||||||||||||||
Sbjct: 132 ttgtttggtagccaaggatgacttgcc 106
>RF00645;MIR169_2;ABIM01014270.1/4721-4577 3649:Carica papaya
(papaya)
Length = 145
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||| ||||||||||
Sbjct: 1 agtcttgtttggtagccaagaatgacttgcc 31
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 7e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 ttgtttgctagccaaggatgacttgcc 70
||||||| |||||||||||||||||||
Sbjct: 6 ttgtttggtagccaaggatgacttgcc 32
>RF00645;MIR169_2;AASG02003632.1/6562-6437 3988:Ricinus communis
(castor bean)
Length = 126
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||||||||| |||||||| ||||||||||
Sbjct: 1 agtcttgtttgatagccaagaatgacttgcc 31
>RF00645;MIR169_2;AASG02003941.1/8059-7924 3988:Ricinus communis
(castor bean)
Length = 136
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
|||||||| || |||||||||||||||||||
Sbjct: 1 agtcttgtctgatagccaaggatgacttgcc 31
>RF00645;MIR169_2;AASG02003632.1/1429-1542 3988:Ricinus communis
(castor bean)
Length = 114
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 44 ttgtttgctagccaaggatgacttgcccgct 74
||||||| |||||||| ||||||||||||||
Sbjct: 5 ttgtttggtagccaagaatgacttgcccgct 35
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
||||| ||||| |||||||||||||||||||
Sbjct: 1 agtctcgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;CU468266.5/4414-4273 3880:Medicago truncatula
(barrel medic)
Length = 142
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
|||| |||||| |||||||||||||||||||
Sbjct: 1 agtcatgtttgatagccaaggatgacttgcc 31
>RF00645;MIR169_2;AM487000.2/29208-29357 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 agtcttgtttgctagccaaggatgacttgcc 70
|||||||| || |||||||||||||||||||
Sbjct: 1 agtcttgtctgatagccaaggatgacttgcc 31
