miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00967;mir-281;AAJJ01001668.1/5737-5811 7070:Tribolium castaneum
(red flour beetle)
Length = 75
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/69 (91%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 17 aatgaagagagctatccgtcgacagtattgctgataaacactgtcatggagttgctctct 76
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 7 aatgaagagagctatccgtcgacagtata--taatttacactgtcatggagttgctctct 64
Query: 77 ttatgaacg 85
|||||||||
Sbjct: 65 ttatgaacg 73
>RF00967;mir-281;ABEP02022249.1/34089-34173 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 aacactgtcatggagttgctctcttt 78
||||||||||||||||||||||||||
Sbjct: 48 aacactgtcatggagttgctctcttt 73
>RF00967;mir-281;AABS01000211.1/21157-21238 7719:Ciona
intestinalis
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggagttgctctctt 77
||||||||||||||||||||||
Sbjct: 46 actgtcatggagttgctctctt 67
