miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 137 aaggcgtcggaccaggcttcattcctctcaaa 168
|||| |||||||||||||||||||||||||||
Sbjct: 58 aaggtgtcggaccaggcttcattcctctcaaa 89
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 138 aggcgtcggaccaggcttcattcctctcaaa 168
|||||||||||||||||||||||||| ||||
Sbjct: 80 aggcgtcggaccaggcttcattcctcgcaaa 110
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 136 aaaggcgtcggaccaggcttcattcctctcaaa 168
|||||| ||||||||||||||||||| ||||||
Sbjct: 68 aaaggcttcggaccaggcttcattcccctcaaa 100
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 aaggcgtcggaccaggcttcattcctctcaaa 168
||||| ||||||||||||||||||| ||||||
Sbjct: 75 aaggcttcggaccaggcttcattcccctcaaa 106
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 aaggcgtcggaccaggcttcattcctctcaaa 168
||||| ||||||||||||||||||| ||||||
Sbjct: 92 aaggcttcggaccaggcttcattcccctcaaa 123
>RF00075;mir-166;AP004125.3/115293-115185 39947:Oryza sativa
Japonica Group
Length = 109
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 140 gcgtcggaccaggcttcattcctc 163
||||||||||||||||||||||||
Sbjct: 81 gcgtcggaccaggcttcattcctc 104
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 cgtcggaccaggcttcattcctctcaa 167
||||||||||||||||||||| |||||
Sbjct: 95 cgtcggaccaggcttcattcccctcaa 121
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 cgtcggaccaggcttcattcctctcaa 167
||||||||||||||||||||| |||||
Sbjct: 118 cgtcggaccaggcttcattcccctcaa 144
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 137 aaggcgtcggaccaggcttcattcctctcaa 167
||||| ||||||||||||||||||| |||||
Sbjct: 65 aaggcttcggaccaggcttcattcccctcaa 95
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 tcggaccaggcttcattcctctc 165
|||||||||||||||||||||||
Sbjct: 73 tcggaccaggcttcattcctctc 95
>RF00075;mir-166;BT056134.1/149-273 4577:Zea mays
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 138 aggcgtcggaccaggcttcattcctctcaaa 168
|||||||||||||||| ||||||||| ||||
Sbjct: 95 aggcgtcggaccaggcctcattcctcgcaaa 125
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 gtcggaccaggcttcattcctctcaa 167
|||||||||||||||||||| |||||
Sbjct: 83 gtcggaccaggcttcattcccctcaa 108
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 gtcggaccaggcttcattcctctcaa 167
|||||||||||||||||||| |||||
Sbjct: 72 gtcggaccaggcttcattcccctcaa 97
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 gtcggaccaggcttcattcctctcaa 167
|||||||||||||||||||| |||||
Sbjct: 75 gtcggaccaggcttcattcccctcaa 100
