miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
           (castor bean)
          Length = 159

 Score = 73.8 bits (37), Expect = 8e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 138 aaagtgagaatcttgatgatgctgcatcagcaataaa 174
           |||||||||||||||||||||||||||||||||||||
Sbjct: 123 aaagtgagaatcttgatgatgctgcatcagcaataaa 159



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
          |||||||| | ||||||||||||||||||||
Sbjct: 1  ttgtttgcgggtgtagcatcatcaagattca 31




>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
          Length = 90

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 142 tgagaatcttgatgatgctgcatcagcaataaa 174
           |||||||||||||||||||||||||||||||||
Sbjct: 58  tgagaatcttgatgatgctgcatcagcaataaa 90




>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
           trichocarpa
          Length = 141

 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 139 aagtgagaatcttgatgatgctgcatcagcaataaa 174
           ||||||||||||||||||||||||||| ||||||||
Sbjct: 106 aagtgagaatcttgatgatgctgcatcggcaataaa 141




>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
          Length = 162

 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 139 aagtgagaatcttgatgatgctgcatcagcaataaa 174
           ||||||||||||||||||||||||||| ||||||||
Sbjct: 127 aagtgagaatcttgatgatgctgcatcggcaataaa 162




>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
           trichocarpa
          Length = 129

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 128 tatttattttaaagtgagaatcttgatgatgctgcatcagcaataaa 174
           ||||| ||| || |||||||||||||||||||||||||||| |||||
Sbjct: 83  tatttctttgaaggtgagaatcttgatgatgctgcatcagccataaa 129



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
          |||||||||| || |||||||||||||||||
Sbjct: 1  ttgtttgcaggtgcagcatcatcaagattca 31




>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
           trichocarpa
          Length = 130

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 141 gtgagaatcttgatgatgctgcatcagcaataaa 174
           |||||||||||||||||||||||||||| |||||
Sbjct: 97  gtgagaatcttgatgatgctgcatcagccataaa 130



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
          |||||||||| || |||||||||||||||||
Sbjct: 1  ttgtttgcaggtgcagcatcatcaagattca 31




>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
           (castor bean)
          Length = 143

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
           |||||||||||||||||||||||||||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagcaa 139




>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
          Length = 168

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
           |||||||||||||||||||||||||||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagcaa 164




>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
          Length = 112

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 142 tgagaatcttgatgatgctgcatcagcaataaa 174
           |||||||||||||||||||||||| ||||||||
Sbjct: 80  tgagaatcttgatgatgctgcatcggcaataaa 112



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
          ||||||||  |||||||||||||||||||||
Sbjct: 1  ttgtttgcgcatgtagcatcatcaagattca 31




>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
           (sorghum)
          Length = 122

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
           |||||||||||||||||||||||||||||
Sbjct: 90  tgagaatcttgatgatgctgcatcagcaa 118




>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
          Length = 112

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 142 tgagaatcttgatgatgctgcatcagcaa 170
           |||||||||||||||||||||||||||||
Sbjct: 80  tgagaatcttgatgatgctgcatcagcaa 108




>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
           (castor bean)
          Length = 160

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 141 gtgagaatcttgatgatgctgcatcagc 168
           ||||||||||||||||||||||||||||
Sbjct: 127 gtgagaatcttgatgatgctgcatcagc 154




>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
          Length = 148

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 142 tgagaatcttgatgatgctgcatcagca 169
           ||||||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatcagca 143




>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
           (sorghum)
          Length = 139

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 142 tgagaatcttgatgatgctgcatcagca 169
           ||||||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatcagca 134




>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
           cress)
          Length = 125

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 140 agtgagaatcttgatgatgctgcatcagcaa 170
           |||| ||||||||||||||||||||||||||
Sbjct: 91  agtgggaatcttgatgatgctgcatcagcaa 121




>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
          Length = 161

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 134 ttttaaagtgagaatcttgatgatgctgcat 164
           |||| ||||||||||||||||||||||||||
Sbjct: 121 ttttgaagtgagaatcttgatgatgctgcat 151



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
          |||||||| ||||||||| ||||||||||||
Sbjct: 1  ttgtttgctgatgtagcaccatcaagattca 31




>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
          Length = 121

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
          |||||||||| ||||||||||||||||||||
Sbjct: 1  ttgtttgcaggtgtagcatcatcaagattca 31



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 142 tgagaatcttgatgatgctgcatcagcaata 172
           |||||||||||||||||||||||| ||||||
Sbjct: 89  tgagaatcttgatgatgctgcatcggcaata 119




>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
          Length = 120

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 20 ttgtttgcagatgtagcatcatcaagattca 50
          |||||||||| ||||||||||||||||||||
Sbjct: 1  ttgtttgcaggtgtagcatcatcaagattca 31



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 142 tgagaatcttgatgatgctgcatcagcaata 172
           |||||||||||||||||||||||| ||||||
Sbjct: 88  tgagaatcttgatgatgctgcatcggcaata 118




>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
           (papaya)
          Length = 213

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 140 agtgagaatcttgatgatgctgcatc 165
           ||||||||||||||||||||||||||
Sbjct: 179 agtgagaatcttgatgatgctgcatc 204




>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
           pekinensis
          Length = 97

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 145 gaatcttgatgatgctgcatcagcaa 170
           ||||||||||||||||||||||||||
Sbjct: 68  gaatcttgatgatgctgcatcagcaa 93




>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
           cress)
          Length = 116

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 142 tgagaatcttgatgatgctgcatcagcaat 171
           |||||||||||||||||||||||| |||||
Sbjct: 84  tgagaatcttgatgatgctgcatcggcaat 113




>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
           cress)
          Length = 109

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 142 tgagaatcttgatgatgctgcatcagcaat 171
           ||||||||||||||||||||||||| ||||
Sbjct: 77  tgagaatcttgatgatgctgcatcaacaat 106




>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
           (papaya)
          Length = 173

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 142 tgagaatcttgatgatgctgcatcagcaataaa 174
           |||||||||||||||||||||||| || |||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggccataaa 173




>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
           pekinensis
          Length = 115

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 142 tgagaatcttgatgatgctgcatca 166
           |||||||||||||||||||||||||
Sbjct: 83  tgagaatcttgatgatgctgcatca 107




>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
          Length = 135

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 145 gaatcttgatgatgctgcatcagca 169
           |||||||||||||||||||||||||
Sbjct: 106 gaatcttgatgatgctgcatcagca 130




>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
          Length = 111

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 145 gaatcttgatgatgctgcatcagc 168
           ||||||||||||||||||||||||
Sbjct: 30  gaatcttgatgatgctgcatcagc 7



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 142 tgagaatcttgatgatgctgcat 164
           |||||||||||||||||||||||
Sbjct: 79  tgagaatcttgatgatgctgcat 101




>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 142 tgagaatcttgatgatgctgcatc 165
           ||||||||||||||||||||||||
Sbjct: 79  tgagaatcttgatgatgctgcatc 102




>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
           Group
          Length = 109

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 142 tgagaatcttgatgatgctgcatc 165
           ||||||||||||||||||||||||
Sbjct: 77  tgagaatcttgatgatgctgcatc 100




>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
           (sorghum)
          Length = 96

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 145 gaatcttgatgatgctgcatcagcaat 171
           ||||||||||||||||||| |||||||
Sbjct: 67  gaatcttgatgatgctgcaccagcaat 93




>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
          (papaya)
          Length = 201

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 21 tgtttgcagatgtagcatcatcaagattca 50
          ||||||| |||| |||||||||||||||||
Sbjct: 2  tgtttgcggatggagcatcatcaagattca 31



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
           ||||||||||||||||||| | ||||||||
Sbjct: 172 gaatcttgatgatgctgcagcggcaataaa 201




>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
           cress)
          Length = 113

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 142 tgagaatcttgatgatgctgca 163
           ||||||||||||||||||||||
Sbjct: 81  tgagaatcttgatgatgctgca 102




>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
           cress)
          Length = 123

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 142 tgagaatcttgatgatgctgca 163
           ||||||||||||||||||||||
Sbjct: 91  tgagaatcttgatgatgctgca 112




>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
           trichocarpa
          Length = 144

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
           ||||||||||||||||||| | ||||||||
Sbjct: 115 gaatcttgatgatgctgcagcggcaataaa 144




>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
          Length = 134

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 145 gaatcttgatgatgctgcatcagcaa 170
           ||||||||||||||||||||| ||||
Sbjct: 105 gaatcttgatgatgctgcatcggcaa 130




>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
          Length = 183

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 145 gaatcttgatgatgctgcatcagcaa 170
           ||||||||||||||||||||| ||||
Sbjct: 154 gaatcttgatgatgctgcatcggcaa 179




>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 21 tgtttgcagatgtagcatcatcaagattca 50
          ||||||| |||| |||||||||||||||||
Sbjct: 2  tgtttgctgatggagcatcatcaagattca 31



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 145 gaatcttgatgatgctgcatcagcaa 170
           |||||||||||||||| |||||||||
Sbjct: 30  gaatcttgatgatgctccatcagcaa 5



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
           ||||||||||||||||||| | ||||||||
Sbjct: 127 gaatcttgatgatgctgcagcggcaataaa 156




>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
          Length = 127

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 142 tgagaatcttgatgatgctgca 163
           ||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121




>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
          Length = 140

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 21 tgtttgcagatgtagcatcatcaagattca 50
          ||||||| |||| |||||||||||||||||
Sbjct: 2  tgtttgcggatggagcatcatcaagattca 31



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 145 gaatcttgatgatgctgcatcagcaataaa 174
           ||||||||||||||||||| | ||||||||
Sbjct: 111 gaatcttgatgatgctgcagcggcaataaa 140




>RF00452;mir-172;EU869090.1/178-288 39946:Oryza sativa Indica Group
          Length = 111

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 145 gaatcttgatgatgctgcatcagcaa 170
           ||||||||||||||||||| ||||||
Sbjct: 82  gaatcttgatgatgctgcaccagcaa 107