miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
          Length = 161

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 27  gccaatgcagcatcatcaagattctca 53
           |||||||||||||||||||||||||||
Sbjct: 155 gccaatgcagcatcatcaagattctca 129




>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
           cress)
          Length = 116

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 25  ttgccaatgcagcatcatcaagattctcat 54
           ||||| ||||||||||||||||||||||||
Sbjct: 112 ttgccgatgcagcatcatcaagattctcat 83




>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
          Length = 112

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 25  ttgccaatgcagcatcatcaagattctcat 54
           ||||| ||||||||||||||||||||||||
Sbjct: 108 ttgccgatgcagcatcatcaagattctcat 79




>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
           trichocarpa
          Length = 141

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 25  ttgccaatgcagcatcatcaagattctca 53
           ||||| |||||||||||||||||||||||
Sbjct: 137 ttgccgatgcagcatcatcaagattctca 109




>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
          Length = 162

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 25  ttgccaatgcagcatcatcaagattctca 53
           ||||| |||||||||||||||||||||||
Sbjct: 158 ttgccgatgcagcatcatcaagattctca 130




>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
          Length = 121

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 25  ttgccaatgcagcatcatcaagattctca 53
           ||||| |||||||||||||||||||||||
Sbjct: 117 ttgccgatgcagcatcatcaagattctca 89




>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
          Length = 120

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 25  ttgccaatgcagcatcatcaagattctca 53
           ||||| |||||||||||||||||||||||
Sbjct: 116 ttgccgatgcagcatcatcaagattctca 88




>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
          Length = 111

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 30  aatgcagcatcatcaagattctcat 54
           |||||||||||||||||||||||||
Sbjct: 102 aatgcagcatcatcaagattctcat 78




>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
          Length = 148

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 100 atgtgaatcttgatggtgctgcactagcaagca 132
           ||||||||||||||||||||||||  |||||||
Sbjct: 34  atgtgaatcttgatggtgctgcacctgcaagca 2



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 138 atgcagcatcatcaagattctcat 115




>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
           (sorghum)
          Length = 139

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 100 atgtgaatcttgatggtgctgcactagcaagca 132
           ||||||||||||||||||||||||  |||||||
Sbjct: 34  atgtgaatcttgatggtgctgcacctgcaagca 2



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 129 atgcagcatcatcaagattctcat 106




>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 31  atgcagcatcatcaagattctcatg 55
           |||||||||||||||||||||||||
Sbjct: 101 atgcagcatcatcaagattctcatg 77




>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
           (papaya)
          Length = 173

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 163 atgcagcatcatcaagattctcat 140




>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
           pekinensis
          Length = 115

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 105 atgcagcatcatcaagattctcat 82



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 95  tttctatgtgaatcttgatggtgctgc 121
           |||| ||||||||||||||||||||||
Sbjct: 39  tttccatgtgaatcttgatggtgctgc 13




>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana
          (thale cress)
          Length = 109

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 31 atgcagcatcatcaagattctcat 54
          ||||||||||||||||||||||||
Sbjct: 99 atgcagcatcatcaagattctcat 76




>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
          Length = 134

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 23  atttgccaatgcagcatcatcaagattc 50
           ||||||| ||||||||||||||||||||
Sbjct: 132 atttgccgatgcagcatcatcaagattc 105




>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
          Length = 183

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 23  atttgccaatgcagcatcatcaagattc 50
           ||||||| ||||||||||||||||||||
Sbjct: 181 atttgccgatgcagcatcatcaagattc 154




>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
           (castor bean)
          Length = 143

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 133 atgcagcatcatcaagattctcat 110




>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
          Length = 168

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 158 atgcagcatcatcaagattctcat 135




>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
           (sorghum)
          Length = 122

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 112 atgcagcatcatcaagattctcat 89




>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
          Length = 112

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 100 atgtgaatcttgatggtgctgcac 123
           ||||||||||||||||||||||||
Sbjct: 34  atgtgaatcttgatggtgctgcac 11



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 31  atgcagcatcatcaagattctcat 54
           ||||||||||||||||||||||||
Sbjct: 102 atgcagcatcatcaagattctcat 79




>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
           (papaya)
          Length = 213

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 31  atgcagcatcatcaagattctca 53
           |||||||||||||||||||||||
Sbjct: 203 atgcagcatcatcaagattctca 181




>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
           cress)
          Length = 123

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 32  tgcagcatcatcaagattctcat 54
           |||||||||||||||||||||||
Sbjct: 112 tgcagcatcatcaagattctcat 90




>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
           trichocarpa
          Length = 130

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 31  atgcagcatcatcaagattctca 53
           |||||||||||||||||||||||
Sbjct: 120 atgcagcatcatcaagattctca 98




>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
           trichocarpa
          Length = 129

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 31  atgcagcatcatcaagattctca 53
           |||||||||||||||||||||||
Sbjct: 119 atgcagcatcatcaagattctca 97




>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
           (castor bean)
          Length = 159

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 31  atgcagcatcatcaagattctca 53
           |||||||||||||||||||||||
Sbjct: 149 atgcagcatcatcaagattctca 127




>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
           (castor bean)
          Length = 160

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 31  atgcagcatcatcaagattctca 53
           |||||||||||||||||||||||
Sbjct: 150 atgcagcatcatcaagattctca 128




>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 101 tgtgaatcttgatggtgctgcac 123
           |||||||||||||||||||||||
Sbjct: 33  tgtgaatcttgatggtgctgcac 11



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 31 atgcagcatcatcaagattctca 53
          |||||||||||||||||||||||
Sbjct: 80 atgcagcatcatcaagattctca 58




>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
          Length = 155

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 28  ccaatgcagcatcatcaagattc 50
           |||||||||||||||||||||||
Sbjct: 148 ccaatgcagcatcatcaagattc 126




>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
          Length = 153

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 28  ccaatgcagcatcatcaagattc 50
           |||||||||||||||||||||||
Sbjct: 146 ccaatgcagcatcatcaagattc 124




>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
           (sorghum)
          Length = 190

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 28  ccaatgcagcatcatcaagattc 50
           |||||||||||||||||||||||
Sbjct: 183 ccaatgcagcatcatcaagattc 161




>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa
          Japonica Group
          Length = 109

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 31 atgcagcatcatcaagattctca 53
          |||||||||||||||||||||||
Sbjct: 99 atgcagcatcatcaagattctca 77




>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
           cress)
          Length = 113

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 32  tgcagcatcatcaagattctca 53
           ||||||||||||||||||||||
Sbjct: 102 tgcagcatcatcaagattctca 81




>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
          Length = 127

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 32  tgcagcatcatcaagattctca 53
           ||||||||||||||||||||||
Sbjct: 121 tgcagcatcatcaagattctca 100