miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AASG02006945.1/8927-9041 3988:Ricinus communis
           (castor bean)
          Length = 115

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 67  tgccaaaggagagctgccctgttactg 93
           |||||||||||||||||||||| ||||
Sbjct: 85  tgccaaaggagagctgccctgtgactg 111

>RF00445;mir-399;ABIM01002081.1/1084-952 3649:Carica papaya (papaya)
          Length = 133

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 67  tgccaaaggagagctgccctgt 88
           ||||||||||||||||||||||
Sbjct: 103 tgccaaaggagagctgccctgt 124

>RF00445;mir-399;EU949059.1/171-61 4577:Zea mays
          Length = 111

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 66  atgccaaaggagagctgccctg 87
           ||||||||||||||||||||||
Sbjct: 80  atgccaaaggagagctgccctg 101