miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
           (papaya)
          Length = 146

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 84  tgctagattcacgcacaaactcgtaat 110
           |||||||||||||||||||||||||||
Sbjct: 114 tgctagattcacgcacaaactcgtaat 140




>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
           pekinensis
          Length = 99

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tagattcacgcacaaactcgtaat 110
           ||||||||||||||||||||||||
Sbjct: 70  tagattcacgcacaaactcgtaat 93




>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
           cress)
          Length = 118

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tagattcacgcacaaactcgtaat 110
           ||||||||||||||||||||||||
Sbjct: 89  tagattcacgcacaaactcgtaat 112




>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
          Length = 131

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tagattcacgcacaaactcgtaat 110
           ||||||||||||||||||||||||
Sbjct: 102 tagattcacgcacaaactcgtaat 125




>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
          Length = 108

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tagattcacgcacaaactcgtaat 110
           ||||||||||||||||||||||||
Sbjct: 79  tagattcacgcacaaactcgtaat 102




>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 34 gtttgtgcgtgaatctaacaacccttt 60
          |||||||||||||||||||| ||||||
Sbjct: 73 gtttgtgcgtgaatctaacaccccttt 47




>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 34 gtttgtgcgtgaatctaacaacccttt 60
          |||||||||||||||||||| ||||||
Sbjct: 73 gtttgtgcgtgaatctaacaccccttt 47