miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 12 agaatctataaagctcaggagggatagcaccatgaa 47
||||||| |||||||||||||||||||| |||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatgaa 40
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 12 agaatctataaagctcaggagggatagcaccatga 46
||||||| |||||||||||||||||||| ||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 70 gcgctatccatcttgagttttatggcttcttcat 103
|||||||||||| ||||||| |||||||||||||
Sbjct: 85 gcgctatccatcctgagtttcatggcttcttcat 118
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 agaatctataaagctcaggagggatagcaccatg 45
||||||| |||||||||||||||||||| |||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 gcgctatccatcttgagttttatggcttct 99
|||||||||||| ||||||| |||||||||
Sbjct: 71 gcgctatccatcctgagtttcatggcttct 100
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 agaatctataaagctcaggagggatagcaccat 44
||||||| |||||||||||||||||||| ||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctataaagctcaggagggatagcaccatg 45
||||||||||||||||||||||| |||||
Sbjct: 10 ctataaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 gagaatctataaagctcaggagggatagcaccatga 46
|||||||| | |||||||||||||||||| ||||||
Sbjct: 4 gagaatctgttaagctcaggagggatagcgccatga 39
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 gagaatctataaagctcaggagggatagcaccatga 46
|||||||| | |||||||||||||||||| ||||||
Sbjct: 4 gagaatctgttaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 taaagctcaggagggatagcaccatga 46
|||||||||||||||||||| ||||||
Sbjct: 13 taaagctcaggagggatagcgccatga 39
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 agaatctataaagctcaggagggatagcaccatg 45
||||||| | |||||||||||||||||| |||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 agaatctataaagctcaggagggatagcaccatg 45
|||||||| |||||||||||||||||| |||||
Sbjct: 5 agaatctaataagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 64 tctatagcgctatccatcttgagttt 89
|||||||||||||||||| |||||||
Sbjct: 99 tctatagcgctatccatcctgagttt 124
