miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00100;7SK;AAWZ01019927.1/8192-8489 28377:Anolis carolinensis
(green anole)
Length = 298
Score = 105 bits (53), Expect = 2e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 66 cagaaatcccagacagtttaccagctgttatgatctccaggagttgaaggccaaaacatc 125
|||||||||||| |||||||| |||||||| ||| || |||||||||||||||||||||
Sbjct: 214 cagaaatcccagccagtttacaagctgttaggatttctgggagttgaaggccaaaacatc 273
Query: 126 tgggaacccacaggttgagaaccac 150
|||| |||||||||||| |||||||
Sbjct: 274 tggggacccacaggttgggaaccac 298
>RF01063;mir-324;AAWZ01004053.1/44385-44449 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 63.9 bits (32), Expect = 7e-10
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| |||||||| ||| ||||||||||||||||||| |||| ||||||||||
Sbjct: 64 cctacaactcccagaaatctcagccagtttaccagctgttatgctctctgggagttgaag 5
>RF01063;mir-324;AAWZ01016964.1/21987-22051 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 60 aactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaaggcc 117
||||| |||||||||||| ||||||||||||| ||| ||| || |||||||||||||
Sbjct: 59 aactcccagaaatcccagccagtttaccagctattaggatttctgggagttgaaggcc 2
>RF01063;mir-324;AAWZ01009674.1/15860-15926 28377:Anolis
carolinensis (green anole)
Length = 67
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgtta 95
|||| ||||| |||||||||||| |||||||||||||||||
Sbjct: 66 cctacaactcccagaaatcccagccagtttaccagctgtta 26
>RF01063;mir-324;AAWZ01017060.1/1223-1159 28377:Anolis carolinensis
(green anole)
Length = 65
Score = 56.0 bits (28), Expect = 2e-07
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| |||||||||||| |||||| ||||| |||| |||||| ||||||||||
Sbjct: 64 cctacaactcccagaaatcccagccagtttgccagcggttaggatctctgggagttgaag 5
>RF01063;mir-324;AAWZ01011894.1/49724-49788 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 60 aactctcagaaatcccagacagtttaccagctgtta 95
||||| |||||||||||| |||||||||||||||||
Sbjct: 9 aactcccagaaatcccagccagtttaccagctgtta 44
>RF01063;mir-324;AAWZ01016146.1/14099-14035 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 56.0 bits (28), Expect = 2e-07
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| |||||||||||| |||||||||| |||||| ||| || ||||||||||
Sbjct: 64 cctacaactcccagaaatcccagccagtttaccaactgttaggatttctgggagttgaag 5
>RF01063;mir-324;AAWZ01002303.1/121637-121701 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 54.0 bits (27), Expect = 6e-07
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 54 acctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaa 113
||||| ||||| ||||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 65 acctacaactcccagaaatcccatccagtttaccagctgttaggacttctgggagttgaa 6
Query: 114 ggc 116
|||
Sbjct: 5 ggc 3
>RF00619;U6atac;AAWZ01037325.1/26794-26675 28377:Anolis carolinensis
(green anole)
Length = 120
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 119 aaacatctgggaacccacaggttgagaaccactgc 153
||||||||||| ||||||||||||| |||||||||
Sbjct: 120 aaacatctggggacccacaggttgacaaccactgc 86
>RF01063;mir-324;AAWZ01034594.1/35170-35234 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 52.0 bits (26), Expect = 2e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| |||||||||||| ||||||| ||||||||| ||| | ||||||||||
Sbjct: 4 cctacaactcccagaaatcccagccagtttagcagctgttaagattgctgggagttgaag 63
Query: 115 gc 116
||
Sbjct: 64 gc 65
>RF01063;mir-324;AAWZ01012005.1/52862-52926 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 60 aactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaaggc 116
||||| |||||||||||| |||||||||||||||| || || ||||||||||||
Sbjct: 9 aactcccagaaatcccagtaagtttaccagctgttagtatttctgggagttgaaggc 65
>RF01063;mir-324;AAWZ01007103.1/117842-117778 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgat 99
|||| ||||| |||||||||||| || |||| |||||||||||||
Sbjct: 4 cctacaactcccagaaatcccagccactttatcagctgttatgat 48
>RF01063;mir-324;AAWZ01021596.1/60462-60526 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 60 aactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaaggc 116
||||| ||||||||||| ||||||||||||||||| || || ||||||||||||
Sbjct: 9 aactcccagaaatcccaaccagtttaccagctgttagtatttctgggagttgaaggc 65
>RF01063;mir-324;AAWZ01003854.1/18734-18670 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 66 cagaaatcccagacagtttaccagctgttatgatctccaggagttgaaggcca 118
|||||||||||| | ||||||||||||||| || || ||||||||||||||
Sbjct: 53 cagaaatcccaggcggtttaccagctgttaggaattctgggagttgaaggcca 1
>RF01063;mir-324;AAWZ01021495.1/76685-76621 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgtta 95
|||| ||||| |||||||| ||| |||||||||||||||||
Sbjct: 64 cctacaactcccagaaatcacagccagtttaccagctgtta 24
>RF01063;mir-324;AAWZ01025701.1/274372-274308 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgtta 95
|||| ||||| |||||||||||| |||| ||||||||||||
Sbjct: 64 cctacaactcccagaaatcccagccagtgtaccagctgtta 24
>RF01063;mir-324;AAWZ01033764.1/36504-36440 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgtta 95
|||| ||||| |||||||||||| ||||||||||| |||||
Sbjct: 64 cctacaactcccagaaatcccagtcagtttaccagttgtta 24
>RF00001;5S_rRNA;AAWZ01010703.1/39267-39401 28377:Anolis
carolinensis (green anole)
Length = 135
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 113 aggccaaaacatctgggaacccacaggttgagaaccactgctcta 157
||||||||||| ||| | ||||||||||||| ||| |||||||||
Sbjct: 135 aggccaaaacacctgaggacccacaggttgaaaactactgctcta 91
>RF01063;mir-324;AAWZ01010206.1/12651-12587 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| ||| | |||||| |||||||||||| |||| ||| || ||||||||||
Sbjct: 64 cctacaactcccagcagtcccagccagtttaccagcagttacgatttctgggagttgaag 5
Query: 115 gcca 118
||||
Sbjct: 4 gcca 1
>RF01063;mir-324;AAWZ01023201.1/62752-62693 28377:Anolis
carolinensis (green anole)
Length = 60
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgtt 94
|||| ||||| |||||| ||||| ||||||||||||||||
Sbjct: 59 cctacaactcccagaaaccccagccagtttaccagctgtt 20
>RF01063;mir-324;AAWZ01004055.1/84472-84408 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| |||||||||| | |||||| |||||||||| ||| | ||||||||||
Sbjct: 64 cctacaactcccagaaatcccggccagttttccagctgttaggattgctgggagttgaag 5
Query: 115 gcca 118
||||
Sbjct: 4 gcca 1
>RF01063;mir-324;AAWZ01036211.1/7378-7314 28377:Anolis carolinensis
(green anole)
Length = 65
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 73 cccagacagtttaccagctgttatgatctccaggagttgaaggc 116
|||||||||||||||||| |||| ||| || ||||||||||||
Sbjct: 22 cccagacagtttaccagcagttaggatatctgggagttgaaggc 65
>RF01063;mir-324;AAWZ01012854.1/18795-18859 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| |||||| |||| || |||||||||||||||||| || ||||||||||
Sbjct: 64 cctacaactcccagaaagcccatccaatttaccagctgttatgatttctgggagttgaag 5
>RF01063;mir-324;AAWZ01000554.1/62286-62222 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 60 aactctcagaaatcccagacagtttaccagctgtta 95
||||| |||||||||||| ||||||||||||||||
Sbjct: 59 aactcccagaaatcccagctagtttaccagctgtta 24
>RF01063;mir-324;AAWZ01016531.1/46257-46193 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| ||| ||||||| | ||||||||||||||| ||| || ||||||||||
Sbjct: 64 cctacaactcccagcaatcccaatcggtttaccagctgttaggatttctgggagttgaag 5
Query: 115 gcca 118
||||
Sbjct: 4 gcca 1
>RF00875;mir-692;AAPE01282089.1/1684-1740 59463:Myotis lucifugus
(little brown bat)
Length = 57
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 131 acccacaggttgagaaccactgctctag 158
|||||||||||||||||| |||||||||
Sbjct: 2 acccacaggttgagaaccgctgctctag 29
>RF00001;5S_rRNA;AAWZ01017858.1/21188-21069 28377:Anolis
carolinensis (green anole)
Length = 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 131 acccacaggttgagaaccactgctctag 158
||||||| ||||||||||||||||||||
Sbjct: 1 acccacaagttgagaaccactgctctag 28
>RF01063;mir-324;AAWZ01015874.1/1305-1240 28377:Anolis carolinensis
(green anole)
Length = 66
Score = 46.1 bits (23), Expect = 2e-04
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 55 cctagaactctcagaaatcccagacagttt-accagctgttatgatctccaggagttgaa 113
|||| ||||| |||||||||||| |||||| ||||||||||| ||| || |||| ||||
Sbjct: 4 cctacaactcccagaaatcccagtcagtttaaccagctgttaggatttctgggagctgaa 63
Query: 114 ggc 116
|||
Sbjct: 64 ggc 66
>RF01063;mir-324;AAWZ01011432.1/31929-31865 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 46.1 bits (23), Expect = 2e-04
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 54 acctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaa 113
||||| ||||| |||||||||||| | ||| ||||||||||| || || |||||||||
Sbjct: 65 acctacaactcccagaaatcccagcctgttaaccagctgttaggacttctgggagttgaa 6
Query: 114 ggc 116
|||
Sbjct: 5 ggc 3
>RF01063;mir-324;AAWZ01005894.1/54019-53957 28377:Anolis
carolinensis (green anole)
Length = 63
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgt 93
|||| ||||| |||||||| ||| |||||||||||||||
Sbjct: 62 cctacaactcccagaaatctcagccagtttaccagctgt 24
>RF01063;mir-324;AAWZ01033330.1/3638-3701 28377:Anolis
carolinensis (green anole)
Length = 64
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 69 aaatcccagacagtttaccagctgtta 95
||||||||| |||||||||||||||||
Sbjct: 50 aaatcccaggcagtttaccagctgtta 24
>RF01063;mir-324;AAWZ01029448.1/103829-103765 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 60 aactctcagaaatcccagacagtttaccagctgtt 94
||||| ||||||| |||| ||||||||||||||||
Sbjct: 59 aactcccagaaattccagtcagtttaccagctgtt 25
>RF01063;mir-324;AAWZ01032244.1/17457-17521 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 46.1 bits (23), Expect = 2e-04
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 60 aactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaaggcca 118
||||| |||||||| ||||||| |||| |||||||| || || ||||||||||||||
Sbjct: 59 aactcccagaaatctcagacagcttactagctgttaggacttctgggagttgaaggcca 1
>RF00001;5S_rRNA;AAWZ01020808.1/197642-197773 28377:Anolis
carolinensis (green anole)
Length = 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 131 acccacaggttgagaaccactgc 153
|||||||||||||||||||||||
Sbjct: 1 acccacaggttgagaaccactgc 23
>RF01063;mir-324;AAWZ01014915.1/76389-76444 28377:Anolis
carolinensis (green anole)
Length = 56
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctg 92
|||| ||||| |||||||||||| || |||||||||||
Sbjct: 55 cctacaactcccagaaatcccagccaatttaccagctg 18
>RF01063;mir-324;AAWZ01001846.1/6335-6399 28377:Anolis carolinensis
(green anole)
Length = 65
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 79 cagtttaccagctgttatgatctccaggagttgaaggc 116
||||||||||||||||| ||| || ||||||||||||
Sbjct: 40 cagtttaccagctgttaggatttctgggagttgaaggc 3
>RF01063;mir-324;AAWZ01008605.1/57484-57548 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 54 acctagaactctcagaaatcccagacagtttaccagct 91
||||| ||||| |||||||||||| ||||| |||||||
Sbjct: 65 acctacaactcccagaaatcccagccagttcaccagct 28
>RF01063;mir-324;AAWZ01005110.1/110324-110388 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 79 cagtttaccagctgttatgatctccaggagttgaaggc 116
||||||||||||||||| ||| || ||||||||||||
Sbjct: 28 cagtttaccagctgttaggatttctgggagttgaaggc 65
>RF01063;mir-324;AAWZ01011152.1/322775-322710 28377:Anolis
carolinensis (green anole)
Length = 66
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 69 aaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
||||||||| ||||||||||||| ||| ||| || ||||||||||
Sbjct: 50 aaatcccagccagtttaccagctattaggatttctgggagttgaag 5
>RF01063;mir-324;AAWZ01004011.1/39835-39899 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 44.1 bits (22), Expect = 6e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| ||||||||| || || |||||||||||||| ||| || |||| |||||
Sbjct: 4 cctacaactcccagaaatcctagccactttaccagctgttaggatttctgggagatgaag 63
Query: 115 gc 116
||
Sbjct: 64 gc 65
>RF01063;mir-324;AAWZ01029617.1/16306-16370 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 44.1 bits (22), Expect = 6e-04
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 55 cctagaactctcagaaatcccagacagtttaccagctgttatgatctccaggagttgaag 114
|||| ||||| |||||||| ||| |||||| | |||||||| ||| || ||||||||||
Sbjct: 64 cctacaactcccagaaatctcagccagtttcctagctgttaggatttctgggagttgaag 5
Query: 115 gc 116
||
Sbjct: 4 gc 3
>RF00100;7SK;AAPE01280398.1/4507-4191 59463:Myotis lucifugus (little
brown bat)
Length = 317
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 131 acccacaggttgagaaccactg 152
||||||||||||||||||||||
Sbjct: 307 acccacaggttgagaaccactg 286
>RF00001;5S_rRNA;AAWZ01030877.1/96559-96452 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 131 acccacaggttgagaaccactg 152
||||||||||||||||||||||
Sbjct: 1 acccacaggttgagaaccactg 22
