miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
(chicken)
Length = 64
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 tgaccgatttctcttggtgtccagagtcttagtttttgtctagcaccatttgaaatcggt 60
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2 tgaccgatttctcttggtgttcagagtctcagtttctgtctagcaccatttgaaatcggt 61
Query: 61 tat 63
|||
Sbjct: 62 tat 64
>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 1 tgaccgatttctcttggtgtccagagtcttagtttttgtctagcaccatttgaaatcggt 60
|||| ||||||| ||||||| ||||||||| || | ||||||||||||||||||||||
Sbjct: 2 tgactgatttcttttggtgttcagagtcttggtcgatttctagcaccatttgaaatcggt 61
Query: 61 ta 62
||
Sbjct: 62 ta 63
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 tgtctagcaccatttgaaatcggtta 62
||||||||||||||||||||||||||
Sbjct: 37 tgtctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggttat 63
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
(chicken)
Length = 64
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggttat 63
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;BX323868.6/63999-64062 7955:Danio rerio
(zebrafish)
Length = 64
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggttat 63
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
Length = 65
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggttat 63
|||||||||||||||||||||||||
Sbjct: 41 tctagcaccatttgaaatcggttat 65
>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
(Japanese medaka)
Length = 65
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggttat 63
|||||||||||||||||||||||||
Sbjct: 41 tctagcaccatttgaaatcggttat 65
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggttat 63
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
nigroviridis
Length = 63
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggtta 62
||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggtta 62
>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
Length = 63
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggtta 62
||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AANH01007454.1/2347-2415 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 tgtctagcaccatttgaaatcggt 60
||||||||||||||||||||||||
Sbjct: 41 tgtctagcaccatttgaaatcggt 64
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggtta 62
||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggtt 61
|||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggtt 62
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ttgtctagcaccatttgaaatc 57
||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatc 63
>RF00074;mir-29;CR749762.6/80332-80264 7955:Danio rerio
(zebrafish)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggt 60
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggt 60
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ttgtctagcaccatttgaaatc 57
||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatc 63
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcggt 60
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;ABVD01453472.1/1046-987 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 60
Score = 42.1 bits (21), Expect = 8e-04
Identities = 52/59 (88%), Gaps = 5/59 (8%)
Strand = Plus / Plus
Query: 1 tgaccgatttctcttggtgtccagagtcttagtttttgtctagcaccatttgaaatcgg 59
||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||
Sbjct: 2 tgaccgatttctcctggtgt-cagagtct---gttttgtctagcacca-ttgaaatcgg 55
>RF00074;mir-29;AANH01007454.1/2589-2651 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 63
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gtctagcaccatttgaaatcggtta 62
||||||||||||| |||||||||||
Sbjct: 38 gtctagcaccattcgaaatcggtta 62
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tgtctagcaccatttgaaatc 57
|||||||||||||||||||||
Sbjct: 42 tgtctagcaccatttgaaatc 62
