miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
           (barrel medic)
          Length = 94

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 83  tgccaaaggagagttgccctgttgct 108
           ||||||||||||||||||||||||||
Sbjct: 64  tgccaaaggagagttgccctgttgct 89




>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
          Length = 93

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 83  tgccaaaggagagttgccctgttgct 108
           ||||||||||||||||||||||||||
Sbjct: 63  tgccaaaggagagttgccctgttgct 88




>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
          Length = 103

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  taacatgccaaaggagagttgccctgt 104
           |||| ||||||||||||||||||||||
Sbjct: 68  taacttgccaaaggagagttgccctgt 94




>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
           cress)
          Length = 116

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 83  tgccaaaggagagttgccctgt 104
           ||||||||||||||||||||||
Sbjct: 85  tgccaaaggagagttgccctgt 106




>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
           (sorghum)
          Length = 102

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 83  tgccaaaggagagttgccctgt 104
           ||||||||||||||||||||||
Sbjct: 72  tgccaaaggagagttgccctgt 93