miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 216 bits (109), Expect = 5e-56
Identities = 121/125 (96%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgacttat 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13 ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgactttt 72
Query: 64 gtggtcccttcctacactccgatggctctttgatatgggaatcttgatgatgctgccgtg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct: 73 gtggtcccttcctacactccgatggctctttgatgtgggaatcttgatgatgctgcagcg 132
Query: 124 gcaat 128
|||||
Sbjct: 133 gcaat 137
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 91 ctttgatatgggaatcttgatgatgctgccgtggcaat 128
||||||||||||||||||||||||||||| | ||||||
Sbjct: 116 ctttgatatgggaatcttgatgatgctgcagcggcaat 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaa 25
||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaa 34
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 50.1 bits (25), Expect = 7e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 89 ctctttgat-atgggaatcttgatgatgctgccgtggcaat 128
||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 158 ctctttgattatgggaatcttgatgatgctgcagcggcaat 198
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaa 25
||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaa 34
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 91 ctttgatatgggaatcttgatgatgctgc 119
|||| ||||||||||||||||||||||||
Sbjct: 95 ctttcatatgggaatcttgatgatgctgc 123
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 88 gctctttgatatgggaatcttgatgatgctgc 119
|||||||||| || ||||||||||||||||||
Sbjct: 89 gctctttgatttgagaatcttgatgatgctgc 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaag 26
|||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaag 35
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaag 26
|||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaag 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgccgtggcaat 128
||||||||||||||||||||| | ||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaat 141
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 tatgggaatcttgatgatgctgc 119
|||||||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgc 171
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 98 atgggaatcttgatgatgctgc 119
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaa 25
||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaa 34
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 101 atgggaatcttgatgatgctgc 122