miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
          Length = 140

 Score =  214 bits (108), Expect = 2e-55
 Identities = 114/116 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgacttat 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13  ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgactttt 72

                                                                   
Query: 64  gtggtcccttcctacactccgatggctctttgatatgggaatcttgatgatgctgc 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 73  gtggtcccttcctacactccgatggctctttgatgtgggaatcttgatgatgctgc 128




>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
           (castor bean)
          Length = 156

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 91  ctttgatatgggaatcttgatgatgctgc 119
           |||||||||||||||||||||||||||||
Sbjct: 116 ctttgatatgggaatcttgatgatgctgc 144



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  ggagcatcatcaagattcacaa 25
          ||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaa 34




>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
          Length = 135

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 91  ctttgatatgggaatcttgatgatgctgc 119
           |||| ||||||||||||||||||||||||
Sbjct: 95  ctttcatatgggaatcttgatgatgctgc 123




>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
          Length = 201

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 89  ctctttgat-atgggaatcttgatgatgctgc 119
           ||||||||| ||||||||||||||||||||||
Sbjct: 158 ctctttgattatgggaatcttgatgatgctgc 189



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  ggagcatcatcaagattcacaa 25
          ||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaa 34




>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
          Length = 127

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 88  gctctttgatatgggaatcttgatgatgctgc 119
           |||||||||| || ||||||||||||||||||
Sbjct: 89  gctctttgatttgagaatcttgatgatgctgc 120



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 4  ggagcatcatcaagattcacaag 26
          |||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaag 35




>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
          trichocarpa
          Length = 144

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 4  ggagcatcatcaagattcacaag 26
          |||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaag 35




>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
          Length = 183

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 97  tatgggaatcttgatgatgctgc 119
           |||||||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgc 171




>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
           (papaya)
          Length = 131

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 98  atgggaatcttgatgatgctgc 119




>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
          (thale cress)
          Length = 123

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  ggagcatcatcaagattcacaa 25
          ||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaa 34




>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
          Length = 134

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 101 atgggaatcttgatgatgctgc 122