miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score =  276 bits (139), Expect = 7e-74
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acggtggtctctaattcgcttggtgcaggtcgggaaccgacttcgccgctccggcagcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   acggtggtctctaattcgcttggtgcaggtcgggaaccgacttcgccgctccggcagcgc 63

                                                                       
Query: 61  cggaggcacgcggcggcctacgattggttgctgagcgaattccgatcccgccttgcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  cggaggcacgcggcggcctacgattggttgctgagcgaattccgatcccgccttgcatca 123

                              
Query: 121 actgaatcggagacggcgg 139
           |||||||||||||||||||
Sbjct: 124 actgaatcggagacggcgg 142




>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
          (barrel medic)
          Length = 121

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 6  ggtctctaattcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaacc 41



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||||
Sbjct: 81  gatcccgccttgcatcaactgaatcggag 109




>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
          Length = 76

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 104 gatcccgccttgcatcaactgaatcggagacggcgg 139
           ||||||||||||||||||||||||||||||| ||||
Sbjct: 36  gatcccgccttgcatcaactgaatcggagaccgcgg 71




>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
          trichocarpa
          Length = 155

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 104 gatcccgccttgcatcaactgaatcggagacggcgg 139
           ||||||||||||||||||||||||||||||| ||||
Sbjct: 115 gatcccgccttgcatcaactgaatcggagaccgcgg 150




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 104 gatcccgccttgcatcaactgaatcggagac 134
           |||||||||||||||||||||||||| ||||
Sbjct: 116 gatcccgccttgcatcaactgaatcgaagac 146




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||||
Sbjct: 97  gatcccgccttgcatcaactgaatcggag 125



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||||
Sbjct: 97  gatcccgccttgcatcaactgaatcggag 125



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||||
Sbjct: 98  gatcccgccttgcatcaactgaatcggag 126



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||||
Sbjct: 95  gatcccgccttgcatcaactgaatcggag 123



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||||
Sbjct: 96  gatcccgccttgcatcaactgaatcggag 124



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||||
Sbjct: 139 gatcccgccttgcatcaactgaatcggag 167



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||| ||||||||||||||||||||||||
Sbjct: 9  ggtctctgattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
          bittercress)
          Length = 126

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||| ||||||||||||||||||||||||
Sbjct: 9  ggtctctgattcgcttggtgcaggtcgggaac 40



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tcccgccttgcatcaactgaatc 128
           |||||||||||||||||||||||
Sbjct: 88  tcccgccttgcatcaactgaatc 110




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 104 gatcccgccttgcatcaactgaatcgga 131
           ||||||||||||||||||||||||||||
Sbjct: 97  gatcccgccttgcatcaactgaatcgga 124



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 104 gatcccgccttgcatcaactgaatcgga 131
           ||||||||||||||||||||||||||||
Sbjct: 101 gatcccgccttgcatcaactgaatcgga 128



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 106 tcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||
Sbjct: 96  tcccgccttgcatcaactgaatcggag 122



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 attcgcttggtgcaggtcggga 35
          ||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38




>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 106 tcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||||||
Sbjct: 98  tcccgccttgcatcaactgaatcggag 124



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
          (barrel medic)
          Length = 112

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 9  ctctaattcgcttggtgcaggtcgggaacc 38
          |||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
          subsp. pekinensis
          Length = 137

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 104 gatcccgccttgcatcaactgaatcggag 132
           |||||||||||||||||| ||||||||||
Sbjct: 95  gatcccgccttgcatcaaatgaatcggag 123




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 5  tggtctctaattcgcttggtgcaggtcgggaac 37
          |||||||  ||||||||||||||||||||||||
Sbjct: 8  tggtctcagattcgcttggtgcaggtcgggaac 40



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 104 gatcccgccttgcatcaactgaatc 128
           |||||||||||||||||||||||||
Sbjct: 69  gatcccgccttgcatcaactgaatc 93




>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
          Length = 126

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
          Length = 126

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 110 gccttgcatcaactgaatcggag 132
           |||||||||||||||||||||||
Sbjct: 92  gccttgcatcaactgaatcggag 114




>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
          (thale cress)
          Length = 126

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
          Length = 131

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 attcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 106 tcccgccttgcatcaactgaatcgga 131
           |||||| |||||||||||||||||||
Sbjct: 92  tcccgctttgcatcaactgaatcgga 117




>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
          Length = 102

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 104 gatcccgccttgcatcaactgaatcggagacggcgg 139
           |||||||||||||| ||| |||||||||| ||||||
Sbjct: 62  gatcccgccttgcaccaagtgaatcggagccggcgg 97




>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
           Group
          Length = 104

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 104 gatcccgccttgcatcaactgaatcggagacggcg 138
           |||||||||||||| ||| |||||||||| |||||
Sbjct: 64  gatcccgccttgcaccaagtgaatcggagccggcg 98