miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01917;MIR2587;AC202358.24/41539-41430 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 165 bits (83), Expect = 3e-40
Identities = 98/103 (95%)
Strand = Plus / Plus
Query: 43 gatggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtag 102
|||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||| ||
Sbjct: 2 gatggtgtcatgatcattgttggccgttcatagaaaccctacaattgcaatgcattgcag 61
Query: 103 cttgtgtggggttcatataacggtcaacagagacccttgacat 145
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cttgtgtggggttcatataacggtcaacagagacccttgacat 104
>RF01917;MIR2587;AC122728.32/33601-33710 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 147 bits (74), Expect = 6e-35
Identities = 95/102 (93%)
Strand = Plus / Plus
Query: 44 atggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagc 103
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 3 atggtgtcacggtcgctgttgaccgttcataggaaccctgcaattcaaatgcattgcagc 62
Query: 104 ttgtgtggggttcatataacggtcaacagagacccttgacat 145
|||||||||||||||||||||||||||| |||||||||||||
Sbjct: 63 ttgtgtggggttcatataacggtcaacaaagacccttgacat 104
>RF01917;MIR2587;AC152349.12/76894-76785 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 145 bits (73), Expect = 3e-34
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 42 cgatggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgta 101
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 1 cgatggtgtcatagtcattgttgaccgttcataggaaccatgcaattgcaatgcattgca 60
Query: 102 gcttgtgtggggttcatataacggtcaacagagacccttga 142
||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 61 acttttgtgggattcatataacggtcaacagagactcttga 101
>RF01917;MIR2587;AC149547.26/78413-78517 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 121 bits (61), Expect = 4e-27
Identities = 91/101 (90%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagct 104
|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaat-----agcattgcagct 58
Query: 105 tgtgtggggttcatataacggtcaacagagacccttgacat 145
||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 59 tgtgtggggttcatataacggtcaacatagaccattgacat 99
>RF01917;MIR2587;AC143338.29/31241-31136 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 107 bits (54), Expect = 6e-23
Identities = 91/102 (89%), Gaps = 6/102 (5%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttc-ataggaaccctgcaattgcaatgcattgtagc 103
|||||||||||||||||||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 4 tggtgtcatggtcattgttgactgttttatatgaaccctgcaattgcattgca-----gc 58
Query: 104 ttgtgtggggttcatataacggtcaacagagacccttgacat 145
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 59 ttgtgtggggttcatataacgatcaacagagacccttgacat 100
>RF01917;MIR2587;AC136472.40/14138-14242 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 87.7 bits (44), Expect = 5e-17
Identities = 88/101 (87%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagct 104
|||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaat---aat--attgcagct 58
Query: 105 tgtgtggggttcatataacggtcaacagagacccttgacat 145
|||||| |||| ||||||| ||||| ||| ||| |||||||
Sbjct: 59 tgtgtgaggttgatataacagtcaatagaaacctttgacat 99
>RF01917;MIR2587;AC149580.19/82987-83091 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 87.7 bits (44), Expect = 5e-17
Identities = 88/101 (87%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagct 104
|||||||||||||||| ||||| |||| || |||||||| ||| || ||||| | ||
Sbjct: 4 tggtgtcatggtcattattgactgttcgtatgaaccctggaat---aa--cattgcaact 58
Query: 105 tgtgtggggttcatataacggtcaacagagacccttgacat 145
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 59 tgtgtggggttcatataacggtcaacagaaacccttgacat 99
>RF01917;MIR2587;CU651599.5/108636-108740 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 85.7 bits (43), Expect = 2e-16
Identities = 85/99 (85%), Gaps = 5/99 (5%)
Strand = Plus / Plus
Query: 47 gtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagcttg 106
|||||||||||||||||||||||||||| || ||||||||||||| ||| ||||
Sbjct: 6 gtgtcatggtcattgttgaccgttcatacgacccctgcaattgcatagca-----gctta 60
Query: 107 tgtggggttcatataacggtcaacagagacccttgacat 145
|| |||| | ||||||| |||||||||||||||||||||
Sbjct: 61 tgcgggggttatataacagtcaacagagacccttgacat 99
>RF01917;MIR2587;AC225475.10/94784-94680 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 83.8 bits (42), Expect = 8e-16
Identities = 84/98 (85%), Gaps = 5/98 (5%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagct 104
||||||||||||||||||||||| |||||| |||| ||||||| |||||| ||||
Sbjct: 4 tggtgtcatggtcattgttgaccattcatatgaactctgcaat-----agcattgaagct 58
Query: 105 tgtgtggggttcatataacggtcaacagagacccttga 142
| |||||||||||||||||| ||||||||||| ||||
Sbjct: 59 tacgtggggttcatataacggccaacagagaccattga 96
>RF01917;MIR2587;CU459038.1/12856-12752 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 79.8 bits (40), Expect = 1e-14
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 94 gcattgtagcttgtgtggggttcatataacggtcaacagagacccttgacat 145
|||||| |||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 48 gcattgcagcttgtgtggggttcatataatggtcaacagagactcttgacat 99
>RF01917;MIR2587;FP017205.3/75453-75557 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 67.9 bits (34), Expect = 5e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgc 90
|||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatataacccctgcaattgc 49
>RF01917;MIR2587;CU179920.2/124764-124661 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 65.9 bits (33), Expect = 2e-10
Identities = 85/101 (84%), Gaps = 6/101 (5%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagct 104
||||||||||||||||||||||| |||||| || || | |||| ||||||| ||||
Sbjct: 4 tggtgtcatggtcattgttgaccattcatatgacccatacaat-----tgcattgcagct 58
Query: 105 tgtgtggggttcatataacggtcaacagagacccttgacat 145
| ||||||||| |||||| | |||||||||||| |||||||
Sbjct: 59 tctgtggggtt-atataatgatcaacagagacctttgacat 98
>RF01917;MIR2587;AC160012.1/20945-21049 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 65.9 bits (33), Expect = 2e-10
Identities = 84/101 (83%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagct 104
||||||||||||||| |||||||||||||| | | ||||||| ||| |||| |||
Sbjct: 4 tggtgtcatggtcatcgttgaccgttcatacaaccactgcaatagcattgca-----gct 58
Query: 105 tgtgtggggttcatataacggtcaacagagacccttgacat 145
| ||||||| | |||| |||||||||||||||| |||||||
Sbjct: 59 tatgtgggggttatatgacggtcaacagagacctttgacat 99
>RF01917;MIR2587;CT954252.6/94986-95090 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 65.9 bits (33), Expect = 2e-10
Identities = 84/101 (83%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgcattgtagct 104
||||||||| ||||||||||||||||||| || | ||||||| ||||||| ||||
Sbjct: 4 tggtgtcataatcattgttgaccgttcatacgaccactgcaat-----tgcattgcagct 58
Query: 105 tgtgtggggttcatataacggtcaacagagacccttgacat 145
| ||||||| | |||||||||||||| ||| |||||||||
Sbjct: 59 tatgtgggggttgtataacggtcaacaaagatccttgacat 99
>RF01917;MIR2587;AC152496.15/25421-25528 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 63.9 bits (32), Expect = 7e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaatt 88
|||||||||||||||||||||||||||||| || || |||||||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatacgacccttgcaatt 47
>RF01917;MIR2587;AC144765.19/125997-126101 3880:Medicago
truncatula (barrel medic)
Length = 105
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgc 90
|||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct: 4 tggtgtcatgatcattgttgaccgttcatataacccctgcaattgc 49
>RF01917;MIR2587;AC135801.24/66662-66752 3880:Medicago truncatula
(barrel medic)
Length = 91
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgc 84
|||||||||||||||||||||||| ||||| || ||||||
Sbjct: 4 tggtgtcatggtcattgttgaccgctcatacgacccctgc 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 115 tcatataacggtcaacagagacccttgacat 145
||||||||||||||| ||||||| |||||||
Sbjct: 55 tcatataacggtcaatagagaccattgacat 85
>RF01917;MIR2587;AC160925.38/40561-40665 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgca 96
|||||||||||||||||||||| | ||||| || |||| |||||||| ||||
Sbjct: 4 tggtgtcatggtcattgttgactgctcatacgacccctacaattgcattgca 55
>RF01917;MIR2587;CR932965.2/22441-22338 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tgtcatggtcattgttgaccgttcata 74
|||||||||||||||||||||||||||
Sbjct: 7 tgtcatggtcattgttgaccgttcata 33
>RF01917;MIR2587;AC165275.5/48411-48307 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 44 atggtgtcatggtcattgttgaccgttcata 74
|||||||||||||||||||||||| ||||||
Sbjct: 3 atggtgtcatggtcattgttgaccattcata 33
>RF01917;MIR2587;AC146866.6/38743-38639 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 46 ggtgtcatggtcattgttgaccgttcatag 75
||||||||| ||||||||||||||||||||
Sbjct: 5 ggtgtcatgatcattgttgaccgttcatag 34
>RF01917;MIR2587;AC144619.3/9698-9802 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcata 74
||||||||||||| ||||||||||||||||
Sbjct: 4 tggtgtcatggtccttgttgaccgttcata 33
>RF01917;MIR2587;CU928860.2/111479-111375 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 117 atataacggtcaacagagacccttgacat 145
||||||||||||||||||||| |||||||
Sbjct: 71 atataacggtcaacagagacctttgacat 99
>RF01917;MIR2587;AC138453.8/88390-88285 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 gtcattgttgaccgttcataggaaccctgcaattgc 90
||||||||||| ||||||||| | ||||||||||||
Sbjct: 15 gtcattgttgatcgttcatagaatccctgcaattgc 50
>RF01917;MIR2587;AC158210.18/25459-25356 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgaccgttcataggaaccctgcaattgcaatgca 96
|||||||||||||||||||| | ||||| || ||||||||||||| ||||
Sbjct: 4 tggtgtcatggtcattgttggtcactcatacgacccctgcaattgcattgca 55
>RF01917;MIR2587;AC175686.7/29700-29596 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 44 atggtgtcatggtcattgttgaccgttcata 74
||||| || ||||||||||||||||||||||
Sbjct: 3 atggtatcttggtcattgttgaccgttcata 33
>RF01917;MIR2587;AC141113.5/135348-135452 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tgtcatggtcattgttgaccgttcata 74
|||||| ||||||||||||||||||||
Sbjct: 7 tgtcatcgtcattgttgaccgttcata 33
>RF01917;MIR2587;AC126013.12/45355-45251 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 atggtgtcatggtcattgttgaccgtt 70
|||||||||||||||||| ||||||||
Sbjct: 3 atggtgtcatggtcattgctgaccgtt 29
>RF01917;MIR2587;CR962137.2/46863-46758 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 52 atggtcattgttgaccgttcataggaaccctgcaattg 89
||||||| || ||||||||||||| | |||||||||||
Sbjct: 11 atggtcactgctgaccgttcatagaatccctgcaattg 48
>RF01917;MIR2587;CR932039.2/14347-14434 3880:Medicago truncatula
(barrel medic)
Length = 88
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 tggtgtcatggtcattgttgac 66
||||||||||||||||||||||
Sbjct: 4 tggtgtcatggtcattgttgac 25
