miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AAAA02031058.1/3780-4020 39946:Oryza sativa Indica
Group
Length = 241
Score = 52.0 bits (26), Expect = 4e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 11 atactccctccgtccctaaataaatgacctagttgact 48
|||||||||||||||||||||| |||| |||||||||
Sbjct: 241 atactccctccgtccctaaatatttgacgtagttgact 204
>RF00906;MIR1122;AP004736.2/17089-17220 39947:Oryza sativa
Japonica Group
Length = 132
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 aaaatactccctccgtccctaaata 32
|||||||||||||||||||||||||
Sbjct: 1 aaaatactccctccgtccctaaata 25
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 atactccctccgtccctaaataaa 34
||||||||||||||||||||||||
Sbjct: 135 atactccctccgtccctaaataaa 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 250 tttatttagggacggagggagtat 273
||||||||||||||||||||||||
Sbjct: 112 tttatttagggacggagggagtat 135
>RF00906;MIR1122;AACV01007572.1/20450-20296 39947:Oryza sativa
Japonica Group
Length = 155
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 252 tatttagggacggagggagtatgt 275
||||||||||||||||||||||||
Sbjct: 131 tatttagggacggagggagtatgt 154
>RF00906;MIR1122;AACV01003381.1/5259-5104 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 3 aatactccctccgtccctaaata 25
>RF00906;MIR1122;AAAA02005173.1/305-150 39946:Oryza sativa Indica
Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 154 aatactccctccgtccctaaata 132
>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 3 aatactccctccgtccctaaata 25
>RF00906;MIR1122;AAAA02022392.1/33564-33694 39946:Oryza sativa
Indica Group
Length = 131
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 129 aatactccctccgtccctaaata 107
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 250 tttatttagggacggagggagtatgtt 276
||||||| |||||||||||||||||||
Sbjct: 96 tttattttgggacggagggagtatgtt 122
>RF00906;MIR1122;AP005896.3/119867-120022 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 3 aatactccctccgtccctaaata 25
>RF00906;MIR1122;AP006458.4/60963-61093 39947:Oryza sativa Japonica
Group
Length = 131
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 129 aatactccctccgtccctaaata 107
