miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 257 gccaaaacgtcatacaatttgggacggagggagtatttg 295
||||||||||| |||||||||| | ||||||||||||||
Sbjct: 39 gccaaaacgtcttacaatttggaatggagggagtatttg 1
>RF01058;MIR806;AC232167.1/58295-58055 63629:Oryza minuta
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 265 gtcatacaatttgggacggagggagta 291
|||||||| ||||||||||||||||||
Sbjct: 28 gtcatacattttgggacggagggagta 2
>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa Indica
Group
Length = 240
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 266 tcatacaatttgggacggagggagtat 292
||||||| |||||||||||||||||||
Sbjct: 27 tcatacattttgggacggagggagtat 1
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 257 gccaaaacgtcatacaatttgggacggagggagta 291
||||||||||| || ||||||| ||||||||||||
Sbjct: 71 gccaaaacgtcttataatttggaacggagggagta 105
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 257 gccaaaacgtcatacaatttgggacggagggagta 291
||||||||| | |||||||||| ||||||||||||
Sbjct: 39 gccaaaacgacttacaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 257 gccaaaacgtcatacaatttgggacggagggagta 291
||||||||||| || | ||||||||||||||||||
Sbjct: 118 gccaaaacgtcttatagtttgggacggagggagta 152
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 257 gccaaaacgtcatacaatttgggacggagggagta 291
|||||||| || |||||||||| ||||||||||||
Sbjct: 39 gccaaaacatcttacaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 257 gccaaaacgtcatacaatttgggacggagggagta 291
||||||||||| || ||||||| ||||||||||||
Sbjct: 77 gccaaaacgtcttataatttggaacggagggagta 111
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 260 aaaacgtcatacaatttgggacggagggagtattt 294
|||||||| |||| | |||||||||||||||||||
Sbjct: 36 aaaacgtcttacattatgggacggagggagtattt 2
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 272 aatttgggacggagggagtattt 294
|||||||||||||||||||||||
Sbjct: 24 aatttgggacggagggagtattt 2
>RF00906;MIR1122;AP008217.1/24769050-24768917 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 273 atttgggacggagggagtatttg 295
|||||||||||||||||||||||
Sbjct: 112 atttgggacggagggagtatttg 134
>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 269 tacaatttgggacggagggagtatttg 295
|||| ||||||||||||||||||||||
Sbjct: 27 tacattttgggacggagggagtatttg 1
