miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
          (sorghum)
          Length = 124

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 8  aaatactccctccgtcccaaattgtatgacgttttgg 44
          ||||||||||||| | |||||||||| ||||||||||
Sbjct: 2  aaatactccctccattccaaattgtaagacgttttgg 38




>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
          sylvaticum
          Length = 126

 Score = 48.1 bits (24), Expect = 7e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  aaaatactccctccgtcccaaatt 30
          ||||||||||||||||||||||||
Sbjct: 1  aaaatactccctccgtcccaaatt 24




>RF01058;MIR806;AC232167.1/58295-58055 63629:Oryza minuta
          Length = 241

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 tactccctccgtcccaaattgtatgac 37
          |||||||||||||||||| ||||||||
Sbjct: 2  tactccctccgtcccaaaatgtatgac 28




>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa
          Indica Group
          Length = 240

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 10 atactccctccgtcccaaattgtatga 36
          ||||||||||||||||||| |||||||
Sbjct: 1  atactccctccgtcccaaaatgtatga 27




>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
          Length = 111

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 8  aaatactccctccgtcccaaattgtatgacgtttt 42
          ||||||||||||||||||| | |||| ||||||||
Sbjct: 2  aaatactccctccgtcccataatgtaagacgtttt 36