miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 50.1 bits (25), Expect = 2e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 8 aaatactccctccgtcccaaattgtatgacgttttgg 44
||||||||||||| | |||||||||| ||||||||||
Sbjct: 2 aaatactccctccattccaaattgtaagacgttttgg 38
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 aaaatactccctccgtcccaaatt 30
||||||||||||||||||||||||
Sbjct: 1 aaaatactccctccgtcccaaatt 24
>RF01058;MIR806;AC232167.1/58295-58055 63629:Oryza minuta
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaattgtatgac 37
|||||||||||||||||| ||||||||
Sbjct: 2 tactccctccgtcccaaaatgtatgac 28
>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa
Indica Group
Length = 240
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaattgtatga 36
||||||||||||||||||| |||||||
Sbjct: 1 atactccctccgtcccaaaatgtatga 27
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 aaatactccctccgtcccaaattgtatgacgtttt 42
||||||||||||||||||| | |||| ||||||||
Sbjct: 2 aaatactccctccgtcccataatgtaagacgtttt 36