miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 50.1 bits (25), Expect = 2e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 11 aatactccatccgtcccaaattgtaagacgttttggc 47
|||||||| ||| | ||||||||||||||||||||||
Sbjct: 3 aatactccctccattccaaattgtaagacgttttggc 39
>RF00906;MIR1122;AM932680.1/129176-129267 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 48.1 bits (24), Expect = 7e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 ttaatactccatccgtcccaaattgtaagacgtttt 44
|||||||||||||| ||||| | |||||||||||||
Sbjct: 1 ttaatactccatccatcccataatgtaagacgtttt 36
>RF00906;MIR1122;CU302344.1/39855-39991 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 aatactccatccgtcccaaattgtaag 37
|||||||||||||||||||| ||||||
Sbjct: 3 aatactccatccgtcccaaaatgtaag 29
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 13 tactccatccgtcccaaattgtaagacgttttggc 47
|||||| ||||| ||||||| ||||||||||||||
Sbjct: 105 tactccctccgttccaaattataagacgttttggc 71
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 13 tactccatccgtcccaaattgtaagacgttttggc 47
|||||| ||||| |||||||||||| |||||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgttttggc 39
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 13 tactccatccgtcccaaattgtaagacgttttggc 47
|||||| ||||||||||| | ||||||||||||||
Sbjct: 152 tactccctccgtcccaaactataagacgttttggc 118
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 13 tactccatccgtcccaaattgtaagacgttttggc 47
|||||| ||||| ||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaattgtaagatgttttggc 39
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 13 tactccatccgtcccaaattgtaagacgttttggc 47
|||||| ||||| ||||||| ||||||||||||||
Sbjct: 111 tactccctccgttccaaattataagacgttttggc 77