miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
          (sorghum)
          Length = 124

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 11 aatactccatccgtcccaaattgtaagacgttttggc 47
          |||||||| ||| | ||||||||||||||||||||||
Sbjct: 3  aatactccctccattccaaattgtaagacgttttggc 39




>RF00906;MIR1122;AM932680.1/129176-129267 4565:Triticum aestivum
          (bread wheat)
          Length = 92

 Score = 48.1 bits (24), Expect = 7e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 9  ttaatactccatccgtcccaaattgtaagacgtttt 44
          |||||||||||||| ||||| | |||||||||||||
Sbjct: 1  ttaatactccatccatcccataatgtaagacgtttt 36




>RF00906;MIR1122;CU302344.1/39855-39991 3880:Medicago truncatula
          (barrel medic)
          Length = 137

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 aatactccatccgtcccaaattgtaag 37
          |||||||||||||||||||| ||||||
Sbjct: 3  aatactccatccgtcccaaaatgtaag 29




>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
           (sorghum)
          Length = 109

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 13  tactccatccgtcccaaattgtaagacgttttggc 47
           |||||| ||||| ||||||| ||||||||||||||
Sbjct: 105 tactccctccgttccaaattataagacgttttggc 71




>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
          (sorghum)
          Length = 152

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 13 tactccatccgtcccaaattgtaagacgttttggc 47
          |||||| ||||| |||||||||||| |||||||||
Sbjct: 5  tactccctccgttccaaattgtaagtcgttttggc 39




>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
           (sorghum)
          Length = 156

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 13  tactccatccgtcccaaattgtaagacgttttggc 47
           |||||| ||||||||||| | ||||||||||||||
Sbjct: 152 tactccctccgtcccaaactataagacgttttggc 118




>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
          (sorghum)
          Length = 112

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 13 tactccatccgtcccaaattgtaagacgttttggc 47
          |||||| ||||| ||||||||||||| ||||||||
Sbjct: 5  tactccctccgttccaaattgtaagatgttttggc 39




>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
           (sorghum)
          Length = 115

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 13  tactccatccgtcccaaattgtaagacgttttggc 47
           |||||| ||||| ||||||| ||||||||||||||
Sbjct: 111 tactccctccgttccaaattataagacgttttggc 77