miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK288546.1/1340-1246 39947:Oryza sativa Japonica
Group
Length = 95
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 269 gtactccctccgtcccgaaatataag 294
||||||||||||||||||||||||||
Sbjct: 4 gtactccctccgtcccgaaatataag 29
>RF00906;MIR1122;AAAA02031042.1/16213-16344 39946:Oryza sativa
Indica Group
Length = 132
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 266 tatgtactccctccgtcccgaaatataa 293
||||||||||||||||||| ||||||||
Sbjct: 1 tatgtactccctccgtccctaaatataa 28
>RF00906;MIR1122;AP008218.1/11741623-11741744 39947:Oryza sativa
Japonica Group
Length = 122
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 267 atgtactccctccgtcccgaaatataag 294
|||||||||||||||||| |||||||||
Sbjct: 121 atgtactccctccgtcccaaaatataag 94
>RF00906;MIR1122;AAAA02034673.1/6609-6720 39946:Oryza sativa Indica
Group
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 268 tgtactccctccgtcccgaaatataagc 295
||||||||||||||||| ||||||||||
Sbjct: 110 tgtactccctccgtcccaaaatataagc 83
>RF00906;MIR1122;AAAA02011966.1/4807-4962 39946:Oryza sativa Indica
Group
Length = 156
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 266 tatgtactccctccgtcccgaaatataa 293
||||||||||||||||||| ||||||||
Sbjct: 156 tatgtactccctccgtcccaaaatataa 129
>RF00906;MIR1122;AACV01003040.1/15315-15426 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 267 atgtactccctccgtcccgaaatataag 294
|||||||||||||||||| |||||||||
Sbjct: 111 atgtactccctccgtcccaaaatataag 84
>RF00906;MIR1122;AACV01021306.1/37655-37776 39947:Oryza sativa
Japonica Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 268 tgtactccctccgtcccgaaatataag 294
||||||||||||||||| |||||||||
Sbjct: 120 tgtactccctccgtcccaaaatataag 94
>RF00906;MIR1122;AP005586.3/39119-39252 39947:Oryza sativa Japonica
Group
Length = 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 269 gtactccctccgtcccgaaatataagc 295
|||||||||||||||| ||||||||||
Sbjct: 131 gtactccctccgtcccaaaatataagc 105
>RF00906;MIR1122;AC068951.18/128543-128410 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 268 tgtactccctccgtcccgaaatataag 294
||||||||||||||||| |||||||||
Sbjct: 132 tgtactccctccgtccctaaatataag 106
>RF00906;MIR1122;AP008209.1/27314174-27314047 39947:Oryza sativa
Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 268 tgtactccctccgtcccgaaatataag 294
||||||||||||||||| |||||||||
Sbjct: 3 tgtactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AAAA02016947.1/4733-4836 39946:Oryza sativa Indica
Group
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 269 gtactccctccgtcccgaaatataagc 295
|||||||||||||||| ||||||||||
Sbjct: 4 gtactccctccgtcccaaaatataagc 30
>RF00906;MIR1122;AP008210.1/24813715-24813809 39947:Oryza sativa
Japonica Group
Length = 95
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 269 gtactccctccgtcccgaaatataagc 295
|||||||||||||||| ||||||||||
Sbjct: 92 gtactccctccgtcccaaaatataagc 66
>RF00906;MIR1122;AC120987.2/63054-63157 39947:Oryza sativa Japonica
Group
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 269 gtactccctccgtcccgaaatataagc 295
|||||||||||||||| ||||||||||
Sbjct: 101 gtactccctccgtcccaaaatataagc 75
