miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AC140545.26/56594-56511 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 281 cttatatatagggacggagggagta 305
|||||||||||||||||||||||||
Sbjct: 56 cttatatatagggacggagggagta 80
>RF01058;MIR806;AAAA02003431.1/13087-13325 39946:Oryza sativa Indica
Group
Length = 239
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 284 atatatagggacggagggagtac 306
|||||||||||||||||||||||
Sbjct: 217 atatatagggacggagggagtac 239
>RF00906;MIR1122;AC150798.3/99329-99438 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 46.1 bits (23), Expect = 3e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 273 aaaagggt-cttatatatagggacggagggagtac 306
|||||||| |||| |||||||||||||||||||||
Sbjct: 38 aaaagggtgcttagatatagggacggagggagtac 4
>RF00906;MIR1122;AAAA02031042.1/16213-16344 39946:Oryza sativa
Indica Group
Length = 132
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 282 ttatatatagggacggagggagtacat 308
|||||| ||||||||||||||||||||
Sbjct: 28 ttatatttagggacggagggagtacat 2
>RF00906;MIR1122;AC068951.18/128543-128410 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 281 cttatatatagggacggagggagtaca 307
||||||| |||||||||||||||||||
Sbjct: 106 cttatatttagggacggagggagtaca 132
>RF00906;MIR1122;AAAA02001165.1/17166-17008 39946:Oryza sativa
Indica Group
Length = 159
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 280 tcttatatatagggacggagggagtac 306
|||||||| ||||||||||||||||||
Sbjct: 130 tcttatatttagggacggagggagtac 156
>RF00906;MIR1122;AL713908.3/140004-139874 4530:Oryza sativa (rice)
Length = 131
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 280 tcttatatatagggacggagggagtac 306
|||||||| ||||||||||||||||||
Sbjct: 102 tcttatatttagggacggagggagtac 128
