miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AC159535.12/121633-121716 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 58.0 bits (29), Expect = 8e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 282 gtgcttacatatagggacggagggagtag 310
|||||||||||||||||||||||||||||
Sbjct: 53 gtgcttacatatagggacggagggagtag 81
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 280 gggtgcttacatatagggacggagggagt 308
||||||||||||||||| |||||||||||
Sbjct: 34 gggtgcttacatataggaacggagggagt 6
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 22 tactccctccgtccctatatgtaa 45
||||||||||||||||||||||||
Sbjct: 80 tactccctccgtccctatatgtaa 57
>RF00906;MIR1122;AC144608.10/69312-69395 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 282 gtgcttacatatagggacggagggagta 309
||||||||||||||||||||||||||||
Sbjct: 32 gtgcttacatatagggacggagggagta 5
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tactccctccgtccctatatgtaa 45
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccctatatgtaa 28
>RF00906;MIR1122;AC175029.6/23680-23597 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 283 tgcttacatatagggacggagggagta 309
|||||||||||||||||||||||||||
Sbjct: 31 tgcttacatatagggacggagggagta 5
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 280 gggtgcttacatatagggacggagggagta 309
||||||||| ||||||||||||||||||||
Sbjct: 51 gggtgcttagatatagggacggagggagta 80
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tactccctccgtccctatatgtaa 45
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccctatatgtaa 28
>RF00906;MIR1122;AC150798.3/99329-99438 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 280 gggtgcttacatatagggacggagggagta 309
||||||||| ||||||||||||||||||||
Sbjct: 34 gggtgcttagatatagggacggagggagta 5
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 280 gggtgcttacatatagggacggagggagta 309
||||| ||||||||||||||||||||||||
Sbjct: 77 gggtggttacatatagggacggagggagta 106
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 22 tactccctccgtccctatatgtaacc 47
||||||||||||||||||||||||||
Sbjct: 106 tactccctccgtccctatatgtaacc 81
>RF00906;MIR1122;AC140545.26/56594-56511 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 282 gtgcttacatatagggacggagggagta 309
||||||| ||||||||||||||||||||
Sbjct: 53 gtgcttatatatagggacggagggagta 80
