miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
          (barrel medic)
          Length = 90

 Score =  178 bits (90), Expect = 9e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  cactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaaca 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaaca 60

                                        
Query: 69 tgaatcggtcgataaacctctgcatccagc 98
          ||||||||||||||||||||||||||||||
Sbjct: 61 tgaatcggtcgataaacctctgcatccagc 90




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 9  cactggatgcagcggttcatcgatctgttcctgaa 43
          |||||||||||||||||||||||||| ||||||||
Sbjct: 1  cactggatgcagcggttcatcgatctcttcctgaa 35



 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 70 gaatcggtcgataaacctctgcatccagc 98
          |||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccagc 88




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
          (papaya)
          Length = 91

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 65 aacatgaatcggtcgataaacctctgcatccagc 98
          ||||||||||| ||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatccagc 91



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 9  cactggatgcagcggttcatcgatctgttcctg 41
          ||||||| |||||||||||||||||| ||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 70  gaatcggtcgataaacctctgcatccagc 98
           |||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
          trichocarpa
          Length = 91

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 78/93 (83%), Gaps = 5/93 (5%)
 Strand = Plus / Plus

                                                                      
Query: 9  cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 65
          ||||||| |||||||||||||||||| ||||||   ||||||  |||| | | |  | ||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 58

                                           
Query: 66 acatgaatcggtcgataaacctctgcatccagc 98
          ||||||| || ||||||||||||||||||||||
Sbjct: 59 acatgaaccgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
          (castor bean)
          Length = 96

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 67 catgaatcggtcgataaacctctgcatccagc 98
          ||||||||| ||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccagc 96



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 9  cactggatgcagcggttcatcgatctgttcctg 41
          ||||||| |||||||||||||||||| ||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 9  cactggatgcagcggttcatcgatctgttcctgaa 43
          ||||||| |||||||||||||||||| ||||||||
Sbjct: 1  cactggaggcagcggttcatcgatcttttcctgaa 35




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
          (thale cress)
          Length = 91

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 70 gaatcggtcgataaacctctgcatccagc 98
          |||||| ||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 70  gaatcggtcgataaacctctgcatccagc 98
           |||||| ||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 67 catgaatcggtcgataaacctctgcatccagc 98
          ||||||| | ||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccagc 88



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 11 ctggatgcagcggttcatcgatctgttcctg 41
          ||||| |||||||||||||||||| ||||||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctg 33




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 70  gaatcggtcgataaacctctgcatccag 97
           |||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 70  gaatcggtcgataaacctctgcatccag 97
           |||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158