miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 186 bits (94), Expect = 5e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 24 aaatcagctatagggcttctctttcttggcaggaaattatcatgaccattccatcatgtg 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatcagctatagggcttctctttcttggcaggaaattatcatgaccattccatcatgtg 60
Query: 84 tcttgccaaaggagagttgccctgttgctgtttt 117
||||||||||||||||||||||||||||||||||
Sbjct: 61 tcttgccaaaggagagttgccctgttgctgtttt 94
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 99.6 bits (50), Expect = 1e-20
Identities = 81/90 (90%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 24 aaatcagctatagggcttctctttcttggcaggaaattatcatgaccattccatcatgtg 83
||||||||||||||||||| || | |||||||||||||||||||||||| | ||||
Sbjct: 1 aaatcagctatagggcttccctctattggcaggaaattatcatgaccatggtgac-tgtg 59
Query: 84 tcttgccaaaggagagttgccctgttgctg 113
||||||||||||||||||||||||||||||
Sbjct: 60 tcttgccaaaggagagttgccctgttgctg 89
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgttgctg 113
|||||||||||||||||||||||| ||||
Sbjct: 71 cttgccaaaggagagttgccctgtggctg 99
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 cttgccaaaggagagttgccctgt 108
||||||||||||||||||||||||
Sbjct: 83 cttgccaaaggagagttgccctgt 106
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 agggcttctctttcttggcagg 56
||||||||||||||||||||||
Sbjct: 12 agggcttctctttcttggcagg 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggagagttgccctgt 108
||||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccctgt 93
