miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AC135320.6/78669-78827 3880:Medicago truncatula
(barrel medic)
Length = 159
Score = 83.8 bits (42), Expect = 7e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 45 ttcactttttaaattcattcaataaatgatgtctgtggtctata-tatagatcatatgca 103
|||| ||||||| ||||||||||||||||||| ||||||| ||| |||| ||||||| |
Sbjct: 36 ttcattttttaagttcattcaataaatgatgtatgtggtccatattataaatcatatacg 95
Query: 104 tcatttattgaatgaacctaataagt 129
||||||||||| ||||||||| ||||
Sbjct: 96 tcatttattgagtgaacctaaaaagt 121
>RF00906;MIR1122;AC174352.7/5727-5571 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 81.8 bits (41), Expect = 3e-15
Identities = 84/97 (86%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctata-tata 92
|||||| ||| || |||||||| |||||||||| |||||||| ||||||||||| ||||
Sbjct: 24 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggtctatattata 83
Query: 93 gatcatatgcatcatttattgaatgaacctaataagt 129
|| || || ||||||| ||||||||||||||| ||||
Sbjct: 84 gaccacatacatcattaattgaatgaacctaaaaagt 120
Score = 81.8 bits (41), Expect = 3e-15
Identities = 84/97 (86%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctat-atata 92
|||||| ||| || |||||||| |||||||||| |||||||| |||||||||| |||||
Sbjct: 134 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggtctataatata 75
Query: 93 gatcatatgcatcatttattgaatgaacctaataagt 129
|| || || ||||||| ||||||||||||||| ||||
Sbjct: 74 gaccacatacatcattaattgaatgaacctaaaaagt 38
>RF00906;MIR1122;AC152348.7/114834-114678 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 71.9 bits (36), Expect = 3e-12
Identities = 85/100 (85%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctata-tata 92
|||||| ||| || |||||||| |||||||||| |||||||| ||||||| ||| |||
Sbjct: 24 tataagcaaatttgactttttatgttcattcaattaatgatgtatgtggtccataatatg 83
Query: 93 gatcatatgcatcatttattgaatgaacctaataagtcaa 132
|| || || ||||||| ||||||||||||||| |||||||
Sbjct: 84 gaccacatacatcattaattgaatgaacctaaaaagtcaa 123
Score = 63.9 bits (32), Expect = 7e-10
Identities = 84/100 (84%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctatat-ata 92
|||||| ||| || |||||||| |||||||||| |||||||| ||||||| |||| ||
Sbjct: 134 tataagcaaatttgactttttaggttcattcaattaatgatgtatgtggtccatattatg 75
Query: 93 gatcatatgcatcatttattgaatgaacctaataagtcaa 132
|| || || ||||||| ||||||||||| ||| |||||||
Sbjct: 74 gaccacatacatcattaattgaatgaacataaaaagtcaa 35
>RF00906;MIR1122;AC151727.27/49652-49808 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 67.9 bits (34), Expect = 4e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 52 tttaaattcattcaataaatgatgtctgtggtctat-atatagatcatatgcatcattta 110
|||| ||||||||||| |||||||| |||||||||| ||||| | || || ||||||| |
Sbjct: 42 tttagattcattcaatcaatgatgtatgtggtctataatataaaccacatacatcattga 101
Query: 111 ttgaatgaacctaa 124
||||||||||||||
Sbjct: 102 ttgaatgaacctaa 115
>RF00906;MIR1122;CT009488.4/82368-82212 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 63.9 bits (32), Expect = 7e-10
Identities = 78/92 (84%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctata-tata 92
|||||| ||| ||||||||||| |||||||||| |||||||| ||||||| ||| |||
Sbjct: 24 tataagcaaatttcactttttaggttcattcaattaatgatgtatgtggtccatattatg 83
Query: 93 gatcatatgcatcatttattgaatgaacctaa 124
| || || ||||||| |||||||||||||||
Sbjct: 84 aaccacatacatcattaattgaatgaacctaa 115
Score = 50.1 bits (25), Expect = 1e-05
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 58 ttcattcaataaatgatgtctgtggtctata-tatagatcatatgcatcatttattgaat 116
|||||||||| |||||||| |||||| ||| ||| || || || ||||||| |||||||
Sbjct: 110 ttcattcaattaatgatgtatgtggttcataatatggaccacatacatcattaattgaat 51
Query: 117 gaacctaataagt 129
|||||||| ||||
Sbjct: 50 gaacctaaaaagt 38
>RF00906;MIR1122;AC174311.25/90843-90999 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 63.9 bits (32), Expect = 7e-10
Identities = 84/100 (84%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctatat-ata 92
|||||| ||| || |||||||| |||||||||| |||||||| ||||| | |||| ||
Sbjct: 24 tataagcaaatttgactttttaggttcattcaattaatgatgtatgtggaccatattatg 83
Query: 93 gatcatatgcatcatttattgaatgaacctaataagtcaa 132
|| || ||||| |||| ||||||||||||||| |||||||
Sbjct: 84 gaccacatgcaccattaattgaatgaacctaaaaagtcaa 123
Score = 48.1 bits (24), Expect = 4e-05
Identities = 82/100 (82%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctata-tata 92
|||||| ||| || |||||||| |||||||||| |||| || ||||||| ||| |||
Sbjct: 134 tataagcaaatttgactttttaggttcattcaattaatggtgcatgtggtccataatatg 75
Query: 93 gatcatatgcatcatttattgaatgaacctaataagtcaa 132
| || || ||||||| ||||||||||||||| |||||||
Sbjct: 74 gtccacatacatcattaattgaatgaacctaaaaagtcaa 35
>RF00906;MIR1122;CR962128.2/73361-73205 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 61.9 bits (31), Expect = 3e-09
Identities = 83/99 (83%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctata-tata 92
|||||| |||||| | |||||| |||||||||| |||||||| ||||||| ||| |||
Sbjct: 24 tataagcaaaattgagtttttaggttcattcaattaatgatgtatgtggtccataatatg 83
Query: 93 gatcatatgcatcatttattgaatgaacctaataagtca 131
| || || ||||||| ||||||||||||||| ||||||
Sbjct: 84 aaccacatacatcattaattgaatgaacctaaaaagtca 122
Score = 56.0 bits (28), Expect = 2e-07
Identities = 77/92 (83%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctatat-ata 92
|||||| |||| | |||||||| |||||||||| |||||||| |||||| |||| ||
Sbjct: 134 tataagcaaaaatgactttttaggttcattcaattaatgatgtatgtggttcatattatg 75
Query: 93 gatcatatgcatcatttattgaatgaacctaa 124
|| || || ||||||| |||||||||||||||
Sbjct: 74 gaccacatacatcattaattgaatgaacctaa 43
>RF00906;MIR1122;AC139600.16/97706-97548 3880:Medicago truncatula
(barrel medic)
Length = 159
Score = 60.0 bits (30), Expect = 1e-08
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 45 ttcactttttaaattcattcaataaatgatgtctgtggtctatat-atagatcatatgca 103
|||| ||||||| ||| ||||| |||| |||| |||| || |||| ||| ||||||| ||
Sbjct: 124 ttcattttttaagttctttcaacaaataatgtatgtgatccatattatatatcatataca 65
Query: 104 tcatttattgaatgaacctaataagt 129
|||||||||||||||| |||| ||||
Sbjct: 64 tcatttattgaatgaatctaaaaagt 39
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 45 ttcactttttaaattcattcaataaatgatgt 76
||||||||||| ||||||||||||||||||||
Sbjct: 36 ttcactttttagattcattcaataaatgatgt 67
>RF00906;MIR1122;AC147201.19/81694-81794 3880:Medicago truncatula
(barrel medic)
Length = 101
Score = 60.0 bits (30), Expect = 1e-08
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 41 aaaattcactttttaaattcattcaataaatgatgtctgtggtctat-atatagatcata 99
||||||||||||||| |||||||| | |||||||| |||||| || ||||||| || |
Sbjct: 3 aaaattcactttttaggttcattcatttaatgatgtatgtggttcataatatagaccaca 62
Query: 100 tgcatcatttattgaatgaacctaataagt 129
| ||||||| | ||||||||||||| ||||
Sbjct: 63 tacatcattaaatgaatgaacctaaaaagt 92
Score = 58.0 bits (29), Expect = 4e-08
Identities = 75/89 (84%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 42 aaattcactttttaaattcattcaataaatgatgtctgtggtctata-tatagatcatat 100
|||||||||||||| |||||||| | |||||||| ||||||||||| ||| | || ||
Sbjct: 98 aaattcactttttaggttcattcatttaatgatgtatgtggtctatattatgaaccacat 39
Query: 101 gcatcatttattgaatgaacctaataagt 129
||||||| | ||||||||||||| ||||
Sbjct: 38 acatcattaaatgaatgaacctaaaaagt 10
>RF00906;MIR1122;AC144431.11/23911-24067 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 56.0 bits (28), Expect = 2e-07
Identities = 77/92 (83%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctat-atata 92
|||||| ||||||||||||||| |||||||| | |||||||| ||||||| || ||||
Sbjct: 24 tataagcaaaattcactttttaggttcattcatttaatgatgtatgtggtccataatatg 83
Query: 93 gatcatatgcatcatttattgaatgaacctaa 124
| || || ||||||| | |||||||||||||
Sbjct: 84 aaccacatacatcattaaatgaatgaacctaa 115
Score = 50.1 bits (25), Expect = 1e-05
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctatat-ata 92
|||||| |||||||| |||||| |||||||| | |||||||| |||||| |||| ||
Sbjct: 134 tataagcaaaattcattttttaggttcattcatttaatgatgtatgtggttcatattatg 75
Query: 93 gatcatatgcatcatttattgaatgaacctaataagt 129
|| || || ||||||| | ||||||||||||| ||||
Sbjct: 74 gaccacatacatcattaaatgaatgaacctaaaaagt 38
>RF00906;MIR1122;AC150978.15/4652-4771 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtc 84
|||||| ||||||||||||||| |||||||| | |||||||| |||||||
Sbjct: 24 tataagcaaaattcactttttaggttcattcatttaatgatgtatgtggtc 74
>RF00906;MIR1122;AC151528.37/26859-27015 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctatat-ata 92
|||||| |||| |||||||||| |||||||| | |||||| | |||||| ||||| ||
Sbjct: 24 tataagcaaaaatcactttttaggttcattcatttaatgatatatgtggtttatattatg 83
Query: 93 gatcatatgcatcatttattgaatgaacctaataagt 129
|||| || ||||||| | ||||||||||||| ||||
Sbjct: 84 aatcacatacatcattaaatgaatgaacctaaaaagt 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtg 81
|||||| ||||||||||||||| |||||||| | |||||||| ||||
Sbjct: 134 tataagcaaaattcactttttaggttcattcatttaatgatgtatgtg 87
>RF00906;MIR1122;AC207600.4/94361-94205 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctata-tata 92
|||||| ||| || |||||||| ||||||||| ||||||| |||||| |||| |||
Sbjct: 24 tataagcaaattttactttttaggttcattcaactgatgatgtatgtggtttataatatg 83
Query: 93 gatcatatgcatcatttattgaatgaacctaataagt 129
|| || || ||||||| ||||||||||||||| ||||
Sbjct: 84 gaccacatacatcattaattgaatgaacctaaaaagt 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctatat-ata 92
|||||| ||| || |||||||| |||||||||| |||||||| ||||||| |||| |||
Sbjct: 134 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggtccatattata 75
Query: 93 gatcatatgcatcatttattgaatgaacctaataagt 129
| || || |||||| |||||||||||||| ||||
Sbjct: 74 aaccacatacatcatcagttgaatgaacctaaaaagt 38
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 96 catatgcatcatttattgaatgaacctaataagtcaa 132
||||| ||||||| ||||||||||||||| |||||||
Sbjct: 75 catatacatcattgattgaatgaacctaaaaagtcaa 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 102 catcatttattgaatgaacctaataagtcaa 132
||||||| ||||||||||||||| |||||||
Sbjct: 65 catcattgattgaatgaacctaaaaagtcaa 35
>RF00906;MIR1122;CT571260.1/63696-63540 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggtctatat 89
|||||| ||||||||||||||| |||||||| | ||| |||| ||||||| ||||
Sbjct: 134 tataagcaaaattcactttttaggttcattcatttaattatgtatgtggtccatat 79
>RF00906;MIR1122;AP009713.1/90059-90217 34305:Lotus japonicus
Length = 159
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 102 catcatttattgaatgaacctaataagt 129
||||||||||||||||||||||| ||||
Sbjct: 66 catcatttattgaatgaacctaaaaagt 39
>RF00906;MIR1122;BABK01043021.1/276-118 34305:Lotus japonicus
Length = 159
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 102 catcatttattgaatgaacctaataagt 129
||||||||||||||||||||||| ||||
Sbjct: 66 catcatttattgaatgaacctaaaaagt 39
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 103 atcatttattgaatgaacctaataagt 129
|||||||||||||||||||||| ||||
Sbjct: 95 atcatttattgaatgaacctaaaaagt 121
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 102 catcatttattgaatgaacctaataagtcaa 132
||||||| ||||||||||||||| |||||||
Sbjct: 58 catcattaattgaatgaacctaaaaagtcaa 88
>RF00906;MIR1122;AC140029.19/78088-78242 3880:Medicago truncatula
(barrel medic)
Length = 155
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 102 catcatttattgaatgaacctaataagtcaa 132
||||||| ||||||||||||||| |||||||
Sbjct: 91 catcattaattgaatgaacctaaaaagtcaa 121
>RF00906;MIR1122;AC170084.14/53354-53198 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 6e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatgtctgtggt 83
|||||| ||||||||||||||| ||||||| | |||||||| ||||||
Sbjct: 134 tataagcaaaattcactttttaggatcattcatttaatgatgtatgtggt 85
>RF00906;MIR1122;AC124215.21/33270-33153 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 34 tataagaaaaattcactttttaaattcattcaataaatgatg 75
|||||| ||||||||||||||| |||||||| | |||||||
Sbjct: 95 tataagcaaaattcactttttaggttcattcatttaatgatg 54
>RF00906;MIR1122;AC147498.15/33743-33901 3880:Medicago truncatula
(barrel medic)
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 114 aatgaacctaataagtcaacttttgtttataataatgatcagagggagta 163
||||||||||| ||||||| | ||| ||||||||| || | |||||||||
Sbjct: 54 aatgaacctaaaaagtcaattgttgcttataataaggaccggagggagta 5
