miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 178 bits (90), Expect = 9e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 5 gcgtggcaccctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgtggcaccctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtat 60
Query: 65 accttcagtatacgtaacagggtgccatac 94
||||||||||||||||||||||||||||||
Sbjct: 61 accttcagtatacgtaacagggtgccatac 90
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 75.8 bits (38), Expect = 9e-14
Identities = 64/73 (87%), Gaps = 6/73 (8%)
Strand = Plus / Plus
Query: 13 ccctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtataccttcag 72
||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 9 ccctgtacgtatactgaatgtatcctgagtgtttt------ctgtccggtataccttcag 62
Query: 73 tatacgtaacagg 85
|||||||||||||
Sbjct: 63 tatacgtaacagg 75
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 15 ctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtataccttcagta 74
||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct: 11 ctgtacgtatactgaatgtatcctgagtgcgcgattct--tgtccggtataccttcagta 68
Query: 75 tacgtaacag 84
||||||||||
Sbjct: 69 tacgtaacag 78
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 tccggtataccttcagtatacgtaaca 83
|||||||||||||||||||||||||||
Sbjct: 47 tccggtataccttcagtatacgtaaca 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 acgtatactaaatgtatcctgagtgc 44
||||||||| ||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgc 40
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 tccggtataccttcagtatacgtaaca 83
|||||||||||||||||||||||||||
Sbjct: 47 tccggtataccttcagtatacgtaaca 73
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 tccggtataccttcagtatacgtaac 82
||||||||||||||||||||||||||
Sbjct: 48 tccggtataccttcagtatacgtaac 73
