miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatc 67
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||||||||||
Sbjct: 68 ccgccttgcaccaagtgaatccgagccg 95
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 105 bits (53), Expect = 9e-23
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 ccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatc 60
||||||||||||||||||||||||||||||||| |||||| | | |||||||| ||||
Sbjct: 8 ccgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatc 65
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||| ||||||
Sbjct: 66 ccgccttgcaccaagtgaatcggagccg 93
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 81.8 bits (41), Expect = 1e-15
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 ccgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagat 59
||||||||||||||||||||||||||||||||| ||||||| ||| | ||| | |||
Sbjct: 8 ccgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggat 66
Query: 60 cccgccttgcaccaagtgaatccgagccg 88
|||||||||||||||||||||| ||||||
Sbjct: 67 cccgccttgcaccaagtgaatcggagccg 95
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 cagatcccgccttgcaccaagtgaatccgagcc 87
|||||||||||||||| ||| ||||||||||||
Sbjct: 67 cagatcccgccttgcatcaactgaatccgagcc 99
