miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 220 bits (111), Expect = 3e-57
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 3 tgcctctgatagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctctgatagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtg 60
Query: 63 agcctttgagatagatggttcataggcagtctccttggctagcctgagtgg 113
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcctttgagatagatggttcataggcagtctccttggctagcctgagtgg 111
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 133 bits (67), Expect = 5e-31
Identities = 102/112 (91%), Gaps = 5/112 (4%)
Strand = Plus / Minus
Query: 2 ctgcctctgatagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgt 61
|||||||||||||||||||||||||||||| |||||||||| || ||||||||| |||||
Sbjct: 117 ctgcctctgatagccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgt 59
Query: 62 gagcctttgagatagatggttcataggcagtctccttggctagcctgagtgg 113
|| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 58 gaacctttg----agttggttcataggcagtctccttggctagcctgagtgg 11
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 91.7 bits (46), Expect = 2e-18
Identities = 81/91 (89%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttgag 72
||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgtgaacctttg-- 57
Query: 73 atagatggttcataggcagtctccttggcta 103
|| ||||||||||||||||||||||||||
Sbjct: 58 --agttggttcataggcagtctccttggcta 86
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 6 ctctgatagccaaggatgacttgcctgtgtcct 38
|||||||||||||||||||||||||||||||||
Sbjct: 114 ctctgatagccaaggatgacttgcctgtgtcct 82
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 78 tggttcataggcagtctccttggctagcctgagtgg 113
|||||||| |||||||||||||||||||||||||||
Sbjct: 46 tggttcatgggcagtctccttggctagcctgagtgg 11
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 ctctgatagccaaggatgacttgcctgtgtcct 38
|||||||||||||||||||||||||||||||||
Sbjct: 4 ctctgatagccaaggatgacttgcctgtgtcct 36
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 78 tggttcataggcagtctccttggctagcctgagtgg 113
|||||||| |||||||||||||||||||||||||||
Sbjct: 72 tggttcatgggcagtctccttggctagcctgagtgg 107
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 78 tggttcataggcagtctccttggctagcctgagt 111
||||||||||||||||||||||||||| ||||||
Sbjct: 46 tggttcataggcagtctccttggctagtctgagt 13
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 6 ctctgatagccaaggatgacttgcctgtgtcctt 39
||||| ||||||||||||||||||||||||||||
Sbjct: 114 ctctggtagccaaggatgacttgcctgtgtcctt 81
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 6 ctctgatagccaaggatgacttgcctgtgtcctt 39
||||| ||||||||||||||||||||||||||||
Sbjct: 127 ctctggtagccaaggatgacttgcctgtgtcctt 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 81 ttcataggcagtctccttggctagcctgagtg 112
||||| ||||||||||||||||||||||||||
Sbjct: 43 ttcatgggcagtctccttggctagcctgagtg 12
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 84 ataggcagtctccttggctagcctgagtgg 113
||||||||||||||||||||||||||||||
Sbjct: 40 ataggcagtctccttggctagcctgagtgg 11
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 cctgcctctgatagccaaggatgacttgcct 31
|||||||||| ||||||||||||||||||||
Sbjct: 136 cctgcctctggtagccaaggatgacttgcct 106
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 ctctgatagccaaggatgacttgcctgtgtcctt 39
||||| ||||||||||||||||||||||||||||
Sbjct: 8 ctctggtagccaaggatgacttgcctgtgtcctt 41
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 78 tggttcataggcagtctccttggctagcctgagt 111
||||||||||||||||||||||||||| ||||||
Sbjct: 76 tggttcataggcagtctccttggctagtctgagt 109
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 84 ataggcagtctccttggctagcctgagtgg 113
||||||||||||||||||||||||||||||
Sbjct: 99 ataggcagtctccttggctagcctgagtgg 128
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 cctgcctctgatagccaaggatgacttgcct 31
|||||||||| ||||||||||||||||||||
Sbjct: 3 cctgcctctggtagccaaggatgacttgcct 33
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 ctctgatagccaaggatgacttgcctgtgtcctt 39
||||| ||||||||||||||||||||||||||||
Sbjct: 3 ctctggtagccaaggatgacttgcctgtgtcctt 36
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 81 ttcataggcagtctccttggctagcctgagtg 112
||||| ||||||||||||||||||||||||||
Sbjct: 87 ttcatgggcagtctccttggctagcctgagtg 118
>RF00865;MIR169_5;AASG02003941.1/7918-8066 3988:Ricinus communis
(castor bean)
Length = 149
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 7 tctgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||||
Sbjct: 135 tctgatagccaaggatgacttgcctg 110
>RF00865;MIR169_5;CAAP02000001.1/222751-222589 29760:Vitis vinifera
Length = 163
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 7 tctgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||||
Sbjct: 149 tctgatagccaaggatgacttgcctg 124
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 7 tctgatagccaaggatgacttgcctgtgtc 36
|||| |||||||||||||||||||||||||
Sbjct: 129 tctggtagccaaggatgacttgcctgtgtc 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 86 aggcagtctccttggctagcctgag 110
|||||||||||||||||||||||||
Sbjct: 38 aggcagtctccttggctagcctgag 14
>RF00645;MIR169_2;AASG02003941.1/8059-7924 3988:Ricinus communis
(castor bean)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tctgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||||
Sbjct: 8 tctgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AM487000.2/29208-29357 29760:Vitis vinifera
Length = 150
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tctgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||||
Sbjct: 8 tctgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgcctgtgtcctttgt 42
||||||||||||||||||| ||||||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgt 30
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa
Japonica Group
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 tctgatagccaaggatgacttgcctgtgtc 36
|||| |||||||||||||||||||||||||
Sbjct: 9 tctggtagccaaggatgacttgcctgtgtc 38
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 86 aggcagtctccttggctagcctgag 110
|||||||||||||||||||||||||
Sbjct: 100 aggcagtctccttggctagcctgag 124
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 6 ctctgatagccaaggatgacttgcctgtg 34
||||| |||||||||||||||||||||||
Sbjct: 119 ctctggtagccaaggatgacttgcctgtg 91
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 gatagccaaggatgacttgcctgtg 34
|||||||||||||||||||||||||
Sbjct: 136 gatagccaaggatgacttgcctgtg 112
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 6 ctctgatagccaaggatgacttgcctgtg 34
||||| |||||||||||||||||||||||
Sbjct: 134 ctctggtagccaaggatgacttgcctgtg 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 aggcagtctccttggctagcct 107
||||||||||||||||||||||
Sbjct: 38 aggcagtctccttggctagcct 17
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 gatagccaaggatgacttgcctgtg 34
|||||||||||||||||||||||||
Sbjct: 135 gatagccaaggatgacttgcctgtg 111
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 gatagccaaggatgacttgcctgtg 34
|||||||||||||||||||||||||
Sbjct: 157 gatagccaaggatgacttgcctgtg 133
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctctgatagccaaggatgacttgcctgtg 34
||||| |||||||||||||||||||||||
Sbjct: 8 ctctggtagccaaggatgacttgcctgtg 36
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gatagccaaggatgacttgcctgtg 34
|||||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctgtg 35
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctctgatagccaaggatgacttgcctgtg 34
||||| |||||||||||||||||||||||
Sbjct: 10 ctctggtagccaaggatgacttgcctgtg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 aggcagtctccttggctagcct 107
||||||||||||||||||||||
Sbjct: 106 aggcagtctccttggctagcct 127
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gatagccaaggatgacttgcctgtg 34
|||||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctgtg 35
>RF00865;MIR169_5;AARH01000583.1/30355-30198 3694:Populus
trichocarpa
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 86 aggcagtctccttggctagcctga 109
||||||||||||||||||||||||
Sbjct: 38 aggcagtctccttggctagcctga 15
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 tgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||
Sbjct: 142 tgatagccaaggatgacttgcctg 119
>RF00865;MIR169_5;AARH01009234.1/70247-70410 3694:Populus
trichocarpa
Length = 164
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 tgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||
Sbjct: 148 tgatagccaaggatgacttgcctg 125
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 tgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||
Sbjct: 136 tgatagccaaggatgacttgcctg 113
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 82 tcataggcagtctccttggctagcctga 109
|||| |||||||||||||||||||||||
Sbjct: 42 tcatgggcagtctccttggctagcctga 15
>RF00645;MIR169_2;AARH01000583.1/30205-30349 3694:Populus
trichocarpa
Length = 145
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 aggcagtctccttggctagcctga 109
||||||||||||||||||||||||
Sbjct: 114 aggcagtctccttggctagcctga 137
>RF00645;MIR169_2;AC216452.1/111514-111664 3694:Populus
trichocarpa
Length = 151
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgatagccaaggatgacttgcctg 32
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 82 tcataggcagtctccttggctagcctga 109
|||| |||||||||||||||||||||||
Sbjct: 74 tcatgggcagtctccttggctagcctga 101
>RF00865;MIR169_5;ABIM01022203.1/1489-1639 3649:Carica papaya
(papaya)
Length = 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 gatagccaaggatgacttgcctg 32
|||||||||||||||||||||||
Sbjct: 134 gatagccaaggatgacttgcctg 112
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 tgatagccaaggatgacttgcct 31
|||||||||||||||||||||||
Sbjct: 135 tgatagccaaggatgacttgcct 113
>RF00865;MIR169_5;CU468266.5/4267-4422 3880:Medicago truncatula
(barrel medic)
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 tgatagccaaggatgacttgcct 31
|||||||||||||||||||||||
Sbjct: 139 tgatagccaaggatgacttgcct 117
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 87 ggcagtctccttggctagcctga 109
|||||||||||||||||||||||
Sbjct: 37 ggcagtctccttggctagcctga 15
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 cctgcctctgatagccaaggatgacttgcct 31
||||||| || ||||||||||||||||||||
Sbjct: 117 cctgcctttggtagccaaggatgacttgcct 87
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 cctgcctctgatagccaaggatgacttgcct 31
||||||| || ||||||||||||||||||||
Sbjct: 117 cctgcctttggtagccaaggatgacttgcct 87
>RF00645;MIR169_2;ABIM01014270.1/4373-4157 3649:Carica papaya
(papaya)
Length = 217
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 tctgatagccaaggatgacttgcctgtgtcc 37
|||| ||||||||||||||||||||| ||||
Sbjct: 9 tctggtagccaaggatgacttgcctgcgtcc 39
>RF00645;MIR169_2;ABIM01022203.1/1632-1495 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gatagccaaggatgacttgcctg 32
|||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgatagccaaggatgacttgcct 31
|||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcct 32
>RF00645;MIR169_2;CU468266.5/4414-4273 3880:Medicago truncatula
(barrel medic)
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgatagccaaggatgacttgcct 31
|||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcct 32
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 ggcagtctccttggctagcctga 109
|||||||||||||||||||||||
Sbjct: 81 ggcagtctccttggctagcctga 103
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cctgcctctgatagccaaggatgacttgcct 31
||||||| || ||||||||||||||||||||
Sbjct: 3 cctgcctttggtagccaaggatgacttgcct 33
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cctgcctctgatagccaaggatgacttgcct 31
||||||| || ||||||||||||||||||||
Sbjct: 3 cctgcctttggtagccaaggatgacttgcct 33
>RF00865;MIR169_5;AY551203.1/210-25 3702:Arabidopsis thaliana (thale
cress)
Length = 186
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 atagccaaggatgacttgcctg 32
||||||||||||||||||||||
Sbjct: 168 atagccaaggatgacttgcctg 147
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 tagccaaggatgacttgcctgt 33
||||||||||||||||||||||
Sbjct: 148 tagccaaggatgacttgcctgt 127
>RF00865;MIR169_5;AASG02003941.1/7647-7771 3988:Ricinus communis
(castor bean)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tgatagccaaggatgacttgcc 30
||||||||||||||||||||||
Sbjct: 109 tgatagccaaggatgacttgcc 88
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 tagccaaggatgacttgcctgt 33
||||||||||||||||||||||
Sbjct: 137 tagccaaggatgacttgcctgt 116
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tagccaaggatgacttgcctgt 33
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcctgt 33
>RF00645;MIR169_2;AY551203.1/30-206 3702:Arabidopsis thaliana
(thale cress)
Length = 177
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 atagccaaggatgacttgcctg 32
||||||||||||||||||||||
Sbjct: 14 atagccaaggatgacttgcctg 35
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tagccaaggatgacttgcctgt 33
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
>RF00645;MIR169_2;AASG02003941.1/7763-7653 3988:Ricinus communis
(castor bean)
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgatagccaaggatgacttgcc 30
||||||||||||||||||||||
Sbjct: 9 tgatagccaaggatgacttgcc 30
>RF00645;MIR169_2;BT061088.1/1224-1114 4577:Zea mays
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgcctgtg 34
||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctgtg 22
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tagccaaggatgacttgcctgt 33
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
