miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 83

 Score =  165 bits (83), Expect = 2e-40
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 16 cctgggtgaggtagtaggttgtatagtggggaatgaaaattcgtcattatggaatccact 75
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cctgggtgaggtagtaggttgtatagtggggaatgaaaattcgtcattatggaatccact 60

                                 
Query: 76 gtacaacttgctaactttcccgg 98
          |||||||||||||||||||||||
Sbjct: 61 gtacaacttgctaactttcccgg 83




>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
          (honey bee)
          Length = 84

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 76/84 (90%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 cctgggtgaggtagtaggttgtatagtggggaatgaaaattcgtcat-tatggaatccac 74
          ||||||||||||||||||||||||||| ||||||| |||||||  || || | | |||||
Sbjct: 1  cctgggtgaggtagtaggttgtatagtagggaatggaaattcgcgatatacgaagtccac 60

                                  
Query: 75 tgtacaacttgctaactttcccgg 98
          ||||||||||||||||||||||||
Sbjct: 61 tgtacaacttgctaactttcccgg 84




>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 83

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 78

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
          rock hyrax)
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
          Length = 84

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
          (Japanese medaka)
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 gggtgaggtagtaggttgtatagt 42
          ||||||||||||||||||||||||
Sbjct: 4  gggtgaggtagtaggttgtatagt 27




>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
          Length = 73

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 4  ggtgaggtagtaggttgtatagt 26




>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
          remanei
          Length = 72

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 4  ggtgaggtagtaggttgtatagt 26




>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
          Length = 73

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 4  ggtgaggtagtaggttgtatagt 26




>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
          (zebrafish)
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
          (zebrafish)
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 76

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 77

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ggtgaggtagtaggttgtatagt 42
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27