miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 54.0 bits (27), Expect = 9e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggctcgag 81
|||||||||||||||||||||||||||
Sbjct: 1 gttgagaggaatgttgtctggctcgag 27
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 tctcggaccacgcttcattcccccca 167
|||||||||| |||||||||||||||
Sbjct: 98 tctcggaccaggcttcattcccccca 123
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 54.0 bits (27), Expect = 9e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggctcgag 81
|||||||||||||||||||||||||||
Sbjct: 1 gttgagaggaatgttgtctggctcgag 27
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 54.0 bits (27), Expect = 9e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggctcgag 81
|||||||||||||||||||||||||||
Sbjct: 1 gttgagaggaatgttgtctggctcgag 27
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 140 aatctcggaccacgcttcattcccccca 167
|||||||||||| |||||||||||||||
Sbjct: 75 aatctcggaccaggcttcattcccccca 102
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggctcgag 81
||||||||||| |||||||||||||||
Sbjct: 1 gttgagaggaacgttgtctggctcgag 27
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggctcgag 81
|||||||||| ||||||||||||||||
Sbjct: 1 gttgagaggattgttgtctggctcgag 27
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana
(thale cress)
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggctcgag 81
|||||||||||| ||||||||||||||
Sbjct: 1 gttgagaggaatattgtctggctcgag 27
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 tctcggaccacgcttcattcccccca 167
|||||||||| |||||||||||||||
Sbjct: 84 tctcggaccaggcttcattcccccca 109
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 66 atctcggaccaggcttcattcccccca 92
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 64 atctcggaccaggcttcattcccccca 90
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 66 atctcggaccaggcttcattcccccca 92
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggctcgag 81
|||||| ||||||||||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 62 atctcggaccaggcttcattcccccca 88
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 186 atctcggaccaggcttcattcccccca 212
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 163 atctcggaccaggcttcattcccccca 189
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 132 atctcggaccaggcttcattcccccca 158
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 152 atctcggaccaggcttcattcccccca 178
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 atctcggaccacgcttcattcccccca 167
||||||||||| |||||||||||||||
Sbjct: 151 atctcggaccaggcttcattcccccca 177
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 tctcggaccacgcttcattcccccca 167
|||||||||| |||||||||||||||
Sbjct: 60 tctcggaccaggcttcattcccccca 85
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus
trichocarpa
Length = 125
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 tctcggaccacgcttcattcccccca 167
|||||||||| |||||||||||||||
Sbjct: 80 tctcggaccaggcttcattcccccca 105
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 tctcggaccacgcttcattcccccca 167
|||||||||| |||||||||||||||
Sbjct: 66 tctcggaccaggcttcattcccccca 91
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gttgagaggaatgttgtctggc 76
||||||||||||||||||||||
Sbjct: 1 gttgagaggaatgttgtctggc 22
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 ttgagaggaatgttgtctggctcgag 81
||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgag 27
