miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 110 ggaatcgatcgataaacctctgcatccagt 139
||||||||||||||||||||||||||||||
Sbjct: 129 ggaatcgatcgataaacctctgcatccagt 158
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 110 ggaatcgatcgataaacctctgcatccagt 139
||||||||||||||||||||||||||||||
Sbjct: 130 ggaatcgatcgataaacctctgcatccagt 159
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 110 ggaatcgatcgataaacctctgcatccag 138
|||||||||||||||||||||||||||||
Sbjct: 103 ggaatcgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 111 gaatcgatcgataaacctctgcatccag 138
||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 111 gaatcgatcgataaacctctgcatccag 138
||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 111 gaatcgatcgataaacctctgcatccag 138
||||||||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 29 cactggattcagcggttcatcgatctgttcc 59
|||||||| ||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcc 31
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 gaatcgatcgataaacctctgcatccag 138
|||||| |||||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatccag 89
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 115 cgatcgataaacctctgcatccagt 139
|||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccagt 91
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 110 ggaatcgatcgataaacctctgcatccag 138
||||||| |||||||||||||||||||||
Sbjct: 104 ggaatcggtcgataaacctctgcatccag 132
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 110 ggaatcgatcgataaacctctgcatccag 138
||||||||||||||| |||||||||||||
Sbjct: 88 ggaatcgatcgataagcctctgcatccag 116
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 gaatcgatcgataaacctctgcatccag 138
|||| |||||||||||||||||||||||
Sbjct: 60 gaatagatcgataaacctctgcatccag 87
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 115 cgatcgataaacctctgcatccag 138
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 gaatcgatcgataaacctctgcatccag 138
|||||| |||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 29 cactggattcagcggttcatcgatctgttcc 59
|||||||| ||||||||||||||||| ||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcc 31
